PmiREN的使用 (植物miRNA百科全书)
Zhonglong Guo1, Zheng Kuang2, Xiaozeng Yang3
1Co-Innovation Center for Sustainable Forestry in Southern China, School of Life Sciences, Nanjing Forestry University, Nanjing, China. guozhl@pku.edu.cn.
Methods in molecular biology (Clifton, N.J.)
|May 16, 2025
概括
植物miRNA百科全书 (PmiREN) 数据库提供了植物微RNA (miRNA) 的全面资源. 它提供了对179个物种的38,186个miRNA位点的访问权限,帮助植物生物学研究.
科学领域:
- 植物生物学 植物生物学
- 基因组学就是基因组学.
- 生物信息学是一种生物信息学.
背景情况:
- 微RNAs (miRNAs) 是重要的转录后基因调节者.
- 在植物miRNA识别,功能和进化方面的研究增加,需要强大的数据库.
- 现有资源需要整合和统一处理,以实现更广泛的可访问性.
研究的目的:
- 介绍和总结植物miRNA百科全书 (PmiREN) 数据库的使用情况.
- 为植物miRNA研究提供一个集中,更新的资源.
- 支持数据挖掘和植物miRNA生物学中的数据驱动研究.
主要方法:
- 建立一个基于知识的数据库 (PmiREN).
- 使用miRDeep-P2.2,对被测序的小RNA库进行统一处理.
- 包括多个数据挖掘和分析工具.
主要成果:
- 皮米伦含有38,186个高度可靠的miRNA位点.
- 该数据库涵盖了179种植物物种.
- 普米伦为研究提供综合工具.
结论:
- 对于植物miRNA研究社区来说,PmiREN是一个有价值的,最新的资源.
- 该数据库促进了高效的数据挖掘和植物miRNA功能的探索.
- PmiREN旨在推进对植物基因调节的理解.
相关概念视频
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RNA interference (RNAi) is a process in which a small non-coding RNA molecule blocks the post-transcriptional expression of a gene by binding to its messenger RNA (mRNA) and preventing the protein from being translated.
This process occurs naturally in cells, often through the activity of genomically-encoded microRNAs. Researchers can take advantage of this mechanism by introducing synthetic RNAs to deactivate specific genes for research or therapeutic purposes. For example, RNAi could be used...
This process occurs naturally in cells, often through the activity of genomically-encoded microRNAs. Researchers can take advantage of this mechanism by introducing synthetic RNAs to deactivate specific genes for research or therapeutic purposes. For example, RNAi could be used...
RNA Editing
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RNA interference (RNAi) is a cellular mechanism that inhibits gene expression by suppressing its transcription or activating the RNA degradation process. The mechanism was discovered by Andrew Fire and Craig Mello in 1998 in plants. Today, it is observed in almost all eukaryotes, including protozoa, flies, nematodes, insects, parasites, and mammals. This precise cellular mechanism of gene silencing has been developed into a technique that provides an efficient way to identify and determine the...
MicroRNAs
MicroRNA (miRNA) are short, regulatory RNA transcribed from introns (non-coding regions of a gene) or intergenic regions (stretches of DNA present between genes). Several processing steps are required to form biologically active, mature miRNA. The initial transcript, called primary miRNA (pri-mRNA), base-pairs with itself, forming a stem-loop structure. Within the nucleus, an endonuclease enzyme, called Drosha, shortens the stem-loop structure into hairpin-shaped pre-miRNA. After the pre-miRNA...


