识别用于早期诊断罕见疾病的表型
Casey N Ta1, Cong Liu1,2, Chunhua Weng1
1Department of Biomedical Informatics, Columbia University Irving Medical Center, New York, NY, U.S.A.
Studies in health technology and informatics
|May 17, 2025
概括
本研究介绍了从健康记录中提取罕见疾病和表型的方法,旨在缩短诊断旅程. 开发的数据集有助于更早地诊断罕见疾病,通过识别疾病表型关联.
科学领域:
- 医疗信息学 医疗信息学
- 遗传学和基因组学 遗传学和基因组学
- 临床决策支持 临床决策支持
背景情况:
- 罕见疾病总体影响着大量患者群体.
- 患有罕见疾病的患者经常经历长期和具有挑战性的诊断旅程.
- 早期诊断对于有效的罕见疾病管理至关重要.
研究的目的:
- 从电子健康记录 (EHR) 中提取罕见疾病和相关表型的可通用方法.
- 创建一个关于罕见疾病现象型关联的综合数据集,以支持早期诊断.
- 加强用于罕见疾病识别的临床决策支持系统.
主要方法:
- 利用结构化的EHR数据和临床笔记来提取信息.
- 分析了发病分布的表型年龄,以建立疾病-表型联系.
- 创建了一个数据集,涵盖了2,300种罕见疾病的50多万个关联.
主要成果:
- 成功提取了一大批罕见疾病-表型关联的大型数据集.
- 该数据集包括超过50万个协会,涉及2300种罕见疾病.
- 根据疾病患病率和表型发病平均年龄的特征性关联.
结论:
- 开发的方法和数据集有助于从EHR中识别罕见疾病和表型.
- 这种资源可以显著帮助缩短罕见病患者的诊断旅程.
- 这些发现支持将这些数据整合到临床决策支持工具中,以改善患者的治疗结果.
相关概念视频
Pedigree Analysis
83.5K
Overview
83.5K
Pleiotropy
39.1K
Pleiotropy is the phenomenon in which a single gene impacts multiple, seemingly unrelated phenotypic traits. For example, defects in the SOX10 gene cause Waardenburg Syndrome Type 4, or WS4, which can cause defects in pigmentation, hearing impairments, and an absence of intestinal contractions necessary for elimination. This diversity of phenotypes results from the expression pattern of SOX10 in early embryonic and fetal development. SOX10 is found in neural crest cells that form melanocytes,...
39.1K
Genetic Screens
4.8K
Genetic screens are tools used to identify genes and mutations responsible for phenotypes of interest. Genetic screens help identify individuals or a group of people at risk of developing genetic diseases and help them with early intervention, targeted therapy, and reproductive options.
Forward genetic screens
Forward or “classical” genetic screens involve creating random mutations in an organism’s DNA using radiation, mutagens, or insertion of additional bases, which...
Forward genetic screens
Forward or “classical” genetic screens involve creating random mutations in an organism’s DNA using radiation, mutagens, or insertion of additional bases, which...
4.8K
Genetic Lingo
99.0K
Overview
99.0K
Karyotyping
56.0K
Overview
56.0K
Genome-wide Association Studies-GWAS
12.3K
Genome-wide association studies or GWAS are used to identify whether common SNPs are associated with certain diseases. Suppose specific SNPs are more frequently observed in individuals with a particular disease than those without the disease. In that case, those SNPs are said to be associated with the disease. Chi-square analysis is performed to check the probability of the allele likely to be associated with the disease.
GWAS does not require the identification of the target gene involved in...
GWAS does not require the identification of the target gene involved in...
12.3K


