标志意识图表对比学习用于药物重新定位
IEEE journal of biomedical and health informatics
|May 20, 2025
概括
这项研究介绍了SIGDR,这是一种用于药物重新定位的新型标志感知图对比学习方法. SIGDR有效地模拟了积极和消极的药物疾病关联,提高了药物发现效率.
科学领域:
- 生物信息学是一种生物信息学.
- 计算生物学 计算生物学
- 药物发现 药物发现 药物发现
背景情况:
- 药物重新定位通过为现有药物找到新的用途来加速药物发现.
- 图形神经网络 (GNN) 越来越多地用于模拟药物疾病关联 (DDA).
- 现有的GNN方法往往忽略负面链接,限制了洞察力.
研究的目的:
- 为药物重新定位提出一种新的标志感知图对比学习方法 (SIGDR).
- 为应对应用标志意识GNN到签名生物网络的挑战.
- 为了有效地利用生物网络中的积极和消极链接来识别DDA.
主要方法:
- 根据药物和疾病的相似性,SIGDR构建了签名单一的图形.
- 从注释的DDA数据创建一个签名的双部分图.
- 采访对比学习增强了使用正负子图的节点表示.
主要成果:
- SIGDR在识别药物疾病关联方面表现出有效性.
- 在三个基准数据集上进行了实验.
- 该模型在10倍交叉验证下取得了强的性能.
结论:
- SIGDR提供了一种强大的新方法,用于使用信号感知图形对比学习来重新定位药物.
- 该方法成功地整合了积极和消极的联系,以改善DDA预测.
- 这项工作推动了GNN在计算药物发现中的应用.
相关概念视频
Structure-Activity Relationships and Drug Design
471
Drug design is a dynamic field that involves discovering and developing new medications based on specific biological targets. This process heavily relies on structure-activity relationships (SAR) and quantitative structure-activity relationships (QSAR) to guide the design and optimization of efficient drugs.
SAR studies the intricate relationship between a drug's chemical structure and biological activity. It focuses on understanding how modifications to a drug's structure can influence...
SAR studies the intricate relationship between a drug's chemical structure and biological activity. It focuses on understanding how modifications to a drug's structure can influence...
471
Drug Discovery: Overview
7.3K
Drug discovery is a multifaceted process involving extensive screening, testing, and optimization of lead compounds to identify potential new drugs for therapeutic use. It combines several approaches, including screening large numbers of natural products, chemical modification of known active molecules, identification of new drug targets, and rational design based on biological mechanisms and drug-receptor structure. These approaches are carried out in both academic research laboratories and...
7.3K
Drug-Receptor Interaction: Antagonist
2.6K
An antagonist is a drug that binds strongly to a receptor without activating it. An antagonist prevents other molecules, such as neurotransmitters or hormones, from binding to the receptor and triggering a cellular response. Such interaction effectively hinders the normal physiological processes mediated by the receptor, resulting in various pharmacological effects depending on the specific receptor targeted.
Antagonists can be classified as competitive or noncompetitive based on their...
Antagonists can be classified as competitive or noncompetitive based on their...
2.6K
Targets for Drug Action: Overview
6.0K
Drugs target macromolecules to modify ongoing cellular processes. Primary drug targets include receptors, ion channels, transporters, and enzymes.
Receptors are either membrane-spanning or intracellular proteins, which upon binding a ligand, get activated and transmit the signal downstream to elicit a response. Drugs bind receptors, either mimicking the action of endogenous ligands or blocking the receptor activity to bring about a modified response. Nearly 35% of approved drugs target the G...
Receptors are either membrane-spanning or intracellular proteins, which upon binding a ligand, get activated and transmit the signal downstream to elicit a response. Drugs bind receptors, either mimicking the action of endogenous ligands or blocking the receptor activity to bring about a modified response. Nearly 35% of approved drugs target the G...
6.0K
Drug-Receptor Bonds
2.6K
Drug-receptor bonds are formed through various chemical forces when drugs interact with target cells. Covalent bonds, strong and irreversible, are exemplified by DNA-alkylating anticancer agents that inhibit cell division. However, such irreversible drug binding lacks selectivity and can modify the DNA of the surrounding healthy cells. Covalent binding often contributes to tissue toxicity, as seen with chloroform and paracetamol metabolites binding to the liver, causing hepatotoxicity.
In...
In...
2.6K
Drug-Receptor Interaction: Agonist
2.3K
Agonists are drugs that interact with specific receptors in the body to produce a biological response. When an agonist binds to a receptor, it activates or enhances the receptor's function, leading to physiological effects. The interaction between agonist drugs and receptors is crucial for their therapeutic action in various medical treatments.
Agonists can bind to receptors in different ways. Some agonists bind directly to the receptor's active site, mimicking the endogenous...
Agonists can bind to receptors in different ways. Some agonists bind directly to the receptor's active site, mimicking the endogenous...
2.3K


