基因组规模的代谢建模识别了与酵母化相关的SNP-SNP相互作用介导的反应
Srijith Sasikumar1,2,3, S Pavan Kumar2,3,4, Nirav Pravinbhai Bhatt2,3,4,5
1Systems Genetics Lab, Department of Biotechnology, Bhupat and Jyoti Mehta School of Biosciences, Indian Institute of Technology Madras, Chennai, Tamil Nadu, India.
NPJ systems biology and applications
|May 20, 2025
概括
酵母转录因子中的单核酸多态 (SNP) 相互作用改变代谢途径,影响分泌效率. 这项研究揭示了这些遗传变异如何影响细胞代谢,并提供了对代谢特征关联的见解.
科学领域:
- 系统生物学 系统生物学
- 代谢工程是代谢工程.
- 酵母遗传学 酵母遗传学
背景情况:
- 基因组规模代谢模型 (GEMs) 对于理解遗传变异效应至关重要.
- 在转录因子中的单核酸多态 (SNPs) 对代谢流量的影响还未得到充分研究.
研究的目的:
- 研究SNP-SNP相互作用在转录因子对酵母代谢网络的影响.
- 为了识别与分泌效率的变化相关的代谢途径和反应.
主要方法:
- 使用酵母基因表达数据构建共同表达网络和SNP特定的GEM.
- 基因组规模差异性流量分析以确定关键的代谢途径.
主要成果:
- SNP-SNP相互作用影响糖解中的代谢调节器连接性,类固醇和胺生物合成,以及氨基酸代谢.
- 六个主要的代谢途径与化效率的变化有关.
- 自被确定为一种补偿机制,通过粉酶通路支持分泌.
结论:
- 转录因子多态相互作用以塑造酵母代谢途径.
- 这项工作提供了对影响代谢特征和分泌效率的遗传变异的见解.
相关概念视频
Yeast Signaling
15.7K
Yeasts are single-celled organisms, but unlike bacteria, they are eukaryotes (cells with a nucleus). Cell signaling in yeast is similar to signaling in other eukaryotic cells. A ligand, such as a protein or a small molecule released from a yeast cell, attaches to a receptor on the cell surface. The binding stimulates second-messenger kinases to activate or inactivate transcription factors that further regulate gene expression. Many of the yeast intracellular signaling cascades have similar...
15.7K
Gene Regulation During Sporulation
713
Sporulation is a complex developmental process that allows certain Gram-positive bacteria, such as Bacillus subtilis and Clostridium species, to survive extreme environmental conditions. This process is tightly regulated by a series of signaling cascades and transcriptional controls, ensuring the formation of a highly resistant endospore.Sporulation is triggered by unfavorable conditions, such as nutrient depletion, and is governed by a phosphorelay system. One of the sensor kinases, such as...
713
Bioreactor Controls-III
67
Strain improvement is a foundational strategy in industrial microbiology aimed at maximizing microbial productivity, particularly because natural isolates typically yield commercially valuable products in very low concentrations. Although optimizing the culture medium and environmental conditions can improve yields, these adjustments are inherently limited by the organism’s genetic potential. As a result, the focus shifts toward genetic modifications to enhance biosynthetic capacity. The...
67


