通过ATAC-Seq探索癌症免疫表观基因组
Chunling Zeng1, Yuexiang Wang2
1CAS Key Laboratory of Tissue Microenvironment and Tumor, Shanghai Institute of Nutrition and Health, University of Chinese Academy of Sciences, Chinese Academy of Sciences, Shanghai, China.
Methods in molecular biology (Clifton, N.J.)
|May 22, 2025
概括
我们优化了用于癌症免疫表观基因组研究的测定转化酶可访问染色体的测试,使用测序 (ATAC-seq) 协议. 这种快速的方法需要最小的样本,并且可以跨越多种细胞和组织类型.
科学领域:
- 表观遗传学 在表观遗传学中,表观遗传学是指表观遗传学.
- 基因组学就是基因组学.
- 癌症研究 癌症研究
背景情况:
- 癌症免疫表观基因组对于理解瘤生物学和对治疗的反应至关重要.
- 使用测序 (ATAC-seq) 检测转化酶可访问染色体是一种强大的技术,用于研究开放的染色体区域.
- 现有的ATAC-seq协议可能在速度,样本输入或适用性方面存在限制.
研究的目的:
- 描述一个针对ATAC-seq.q.优化的协议.
- 突出优化ATAC-seq方法在癌症研究中的优点.
- 为探索癌症免疫表观基因组提供了一个精简的工作流.
主要方法:
- 从细胞或组织中提取核.
- 将测序适配器转换为可访问的染色体区域.
- 图书馆放大,测序和随后的数据分析.
主要成果:
- 优化的ATAC-seq协议是快速和灵敏的.
- 它需要低样本输入.
- 该协议适用于广泛的细胞和组织类型,包括与癌症免疫学相关的细胞和组织类型.
结论:
- 优化的ATAC-seq协议为研究癌症免疫表观基因组提供了一种有效的方法.
- 它的速度,灵敏度和广泛适用性使其成为癌症研究的宝贵工具.
- 该协议有助于更深入地了解瘤微环境中的表观遗传调节.
相关概念视频
Cancer
51.5K
Cancers arise due to mutations in genes involved in the regulation of cell division, which leads to unrestricted cell proliferation. Modern science and medicine have made great strides in the understanding and treatment of cancer, including eradicating cancer in some patients. However, there is still no cure for cancer. This is largely due to the fact that cancer is a large group of many diseases.
51.5K
Cancers Originate from Somatic Mutations in a Single Cell
12.4K
Cancer arises from mutations in the critical genes that allow healthy cells to escape cell cycle regulation and acquire the ability to proliferate indefinitely. Though originating from a single mutation event in one of the originator cells, cancer progresses when the mutant cell lines continue to gain more and more mutations, and finally, become malignant. For example, chronic myelogenous leukemia (CML) develops initially as a non-lethal increase in white blood cells, which progressively...
12.4K
Adaptive Mechanisms in Cancer Cells
5.7K
Cancer cells accumulate genetic changes at an abnormally rapid rate due to the defects in the DNA repair mechanisms. From an evolutionary perspective, such genetic instability is advantageous for cancer development. Mutant cell lines accumulate a series of beneficial mutations that contribute to their progression into cancer.
Some of the advantages that cancer cells have on normal cells include - enhanced ability to divide without terminally differentiating, induce new blood vessel formation,...
Some of the advantages that cancer cells have on normal cells include - enhanced ability to divide without terminally differentiating, induce new blood vessel formation,...
5.7K
Cancer-Critical Genes II: Tumor Suppressor Genes
7.9K
Genes usually encode proteins necessary for the proper functioning of a healthy cell. Mutations can often cause changes to the gene expression pattern, thereby altering the phenotype.
When the function of certain critical genes, especially those involved in cell cycle regulation and cell growth signaling cascades, gets disrupted, it upsets the cell cycle progression. Such cells with unchecked cell cycles start proliferating uncontrollably and eventually develop into tumors.
Such genes that act...
When the function of certain critical genes, especially those involved in cell cycle regulation and cell growth signaling cascades, gets disrupted, it upsets the cell cycle progression. Such cells with unchecked cell cycles start proliferating uncontrollably and eventually develop into tumors.
Such genes that act...
7.9K
Epigenetic Regulation
3.4K
Epigenetic changes alter the physical structure of the DNA without changing the genetic sequence and often regulate whether genes are turned on or off. This regulation ensures that each cell produces only proteins necessary for its function. For example, proteins that promote bone growth are not produced in muscle cells. Epigenetic mechanisms play an essential role in healthy development. Conversely, precisely regulated epigenetic mechanisms are disrupted in diseases like cancer.
X-chromosome...
X-chromosome...
3.4K


