长读全基因组测序揭示了对HOXD13的上游删除,导致协同多样性
Jonathan Rips1, Rivka Birnbaum1, Chaim Jalas2
1Department of Genetics, Hadassah Medical Center, Jerusalem, Israel.
American journal of medical genetics. Part A
|May 30, 2025
概括
肢体形的Synpolydactyly (SPD) 与HOXD13.的上游新型微切除有关. 这一发现突出了长期阅读的基因组测序.
科学领域:
- 遗传学 是一个遗传学.
- 发展生物学 发展生物学
- 基因组医学是基因组医学.
背景情况:
- 综合多肢症 (SPD) 是一种肢体形综合征,通常与HOXD13基因变异有关.
- 外体序列测序在识别非编码监管变异方面存在局限性.
研究的目的:
- 在外体阴性病例中调查家族性SPD的遗传原因.
- 为了证明长读基因组测序对识别非编码变异的有用性.
主要方法:
- 长读全基因组测序 (WGS-LRS) 使用牛津纳米孔.
- 进行比较的微阵列 (CMA-Cytoscan HT) 用于验证.
- 聚合酶链反应 (PCR) 用于分离分析.
主要成果:
- 在受影响的兄弟姐妹中,确定了EVX2和HOXD13上游的~5.6kb微切除.
- 删除影响了一个保存的非编码调节区域 (EH38E2053988) 并与R1同类区域重叠.
- 删除的父亲遗传被证实.
结论:
- 在HOXD13上游的非编码调控变异可能导致SPD.
- 长时间读取的WGS对于检测外基因组测序遗漏的这种变异至关重要.
- 在SPD中扩展HOXD13监管区域的基因型-表型相关性.
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