染色体层次的基因组组装和注释Phyllostachys violascens"Prevernalis"的基因组组
Haixia Wang1,2, Hui Ding3, Ping Cheng3
1Jiangxi Academy of Forestry, Jiangxi, 330013, China. 44916972@qq.com.
Scientific data
|May 30, 2025
概括
一个高质量的基因组为四体Phyllostachys violascensens.
科学领域:
- 植物基因组学 植物基因组学
- 多倍体基因组测序的多倍体基因组测序
- 在 Bambusoideae 的研究中.
背景情况:
- 菲洛斯塔基斯紫色子'Prevernalis'的芽在营养和味道方面受到重视.
- 由于多化和庞大的基因组大小,Prevernalis的高质量参考基因组以前无法获得.
研究的目的:
- 为了生成一个高质量的基因组组装为四体Prevernalis.
- 为功能研究和分子育种提供基因组资源.
主要方法:
- 使用PacBio的长读数和Hi-C测序技术.
- 组装了一个 2156.14 Mb 的基因组,固定在 24 个染色体上.
主要成果:
- 实现了N50脚手架的56.48 Mb,BUSCO得分为97.51%,LAI得分为20.03. 获得了N50脚手架的56.48 Mb,BUSCO得分为97.51%,LAI得分为20.03.
- 鉴定了53,558个编码蛋白质的基因,具有94.13%的功能注释.
- 基因组结构与Ph.edulis.相似.
结论:
- 高质量的基因组组装和注释提供了必不可少的资源.
- 促进未来的功能基因组研究和Prevernalis.分子育种.
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