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相关概念视频

DNA Bacteriophages01:26

DNA Bacteriophages

170
Bacteriophages, or phages, are viruses that specifically infect bacteria, utilizing their genetic material to hijack host cellular machinery for replication. DNA bacteriophages employ single-stranded DNA (ssDNA) or double-stranded DNA (dsDNA) genomes. These phages exhibit diverse replication strategies and host interactions, influencing their ecological roles and applications in biotechnology and medicine.ssDNA BacteriophagesssDNA phages, with their small genomes, utilize unique strategies to...
170
Lytic Cycle of Bacteriophages01:30

Lytic Cycle of Bacteriophages

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Bacteriophages, also known as phages, are specialized viruses that infect bacteria. A key characteristic of phages is their distinctive “head-tail” morphology. A phage begins the infection process (i.e., lytic cycle) by attaching to the outside of a bacterial cell. Attachment is accomplished via proteins in the phage tail that bind to specific receptor proteins on the outer surface of the bacterium. The tail injects the phage’s DNA genome into the bacterial cytoplasm. In the...
72.3K
Antibiotic Selection00:57

Antibiotic Selection

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Overview
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Viral Replication: Lysogenic Cycle01:16

Viral Replication: Lysogenic Cycle

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The lysogenic cycle is a crucial viral replication strategy that allows bacteriophages to persist within host cells without immediately destroying them. This process is primarily observed in temperate phages, such as bacteriophage lambda (λ), which infects Escherichia coli. The cycle allows the viral genome to persist across bacterial generations while keeping host cells viable.Integration of the Viral GenomeUpon infection, bacteriophage lambda attaches to the bacterial surface and injects...
284
Lysogenic Cycle of Bacteriophages00:43

Lysogenic Cycle of Bacteriophages

63.4K
In contrast to the lytic cycle, phages infecting bacteria via the lysogenic cycle do not immediately kill their host cell. Instead, they combine their genome with the host genome, allowing the bacteria to replicate the phage DNA along with the bacterial genome. The incorporated copy of the phage genome is called the prophage. Some prophages can re-activate and enter the lytic cycle. This often occurs in response to a perturbation, such as DNA damage, but can also transpire in the absence of...
63.4K
CRISPR and crRNAs02:53

CRISPR and crRNAs

17.5K
Bacteria and archaea are susceptible to viral infections just like eukaryotes; therefore, they have developed a unique adaptive immune system to protect themselves. Clustered regularly interspaced short palindromic repeats and CRISPR-associated proteins (CRISPR-Cas) are present in more than 45% of known bacteria and 90% of known archaea.
The CRISPR-Cas system stores a copy of foreign DNA in the host genome and uses it to identify the foreign DNA upon reinfection. CRISPR-Cas has three different...
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相关实验视频

Updated: Sep 19, 2025

A Protocol for Phage Display and Affinity Selection Using Recombinant Protein Baits
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A Protocol for Phage Display and Affinity Selection Using Recombinant Protein Baits

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多目标学习和细菌体特异性的设计.

Nathan Novy1, Phil Huss1, Sarah Evert1

  • 1University of Wisconsin-Madison, Biochemistry.

bioRxiv : the preprint server for biology
|June 6, 2025
PubMed
概括

深度学习使得设计T7菌体受体结合蛋白能够实现多种功能,增强感染性和特异性. 这种方法通过考虑复杂的多功能景观来优化蛋白质设计.

科学领域:

  • 蛋白质工程和计算生物学.
  • 合成生物学和病毒学.
  • 机器学习在生物系统中的应用.

背景情况:

  • 蛋白质经常被设计为单一的功能,忽视了它们固有的多功能性.
  • 了解多功能景观是有效的蛋白质设计和工程的关键.
  • 菌体T7受体结合蛋白可以作为研究宿主向能力的模型.

研究的目的:

  • 应用深度学习来理解和设计T7菌体受体结合蛋白的多功能宿主向景观.
  • 通过使用多目标机器学习来增强蛋白质的感染性,特异性和毒性普遍性.
  • 探索菌体向能力的可塑性和可调性.

主要方法:

  • 利用深度学习模型来分析和预测蛋白质功能.
  • 对比了各种模型架构和设计策略,以优化蛋白质.
  • 实验性特征设计的菌体优化26个不同的任务.
  • 在复杂的特异性设计中使用多目标机器学习.

主要成果:

  • 证明了复杂特异性的成功设计,具有高的成功率,可用于验证.
  • 展示了T7菌体向能力的高可塑性,很少有突变改变了特异性.
  • 验证了多目标机器学习在导航多功能景观中的有效性.

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Bacteriophage Effectiveness for Biocontrol of Foodborne Pathogens Evaluated via High-Throughput Settings
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Author Spotlight: Efficiently Eliminating Bacteriophages from Infected Salmonella Cultures Using Lipopolysaccharides
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Last Updated: Sep 19, 2025

A Protocol for Phage Display and Affinity Selection Using Recombinant Protein Baits
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Bacteriophage Effectiveness for Biocontrol of Foodborne Pathogens Evaluated via High-Throughput Settings
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Bacteriophage Effectiveness for Biocontrol of Foodborne Pathogens Evaluated via High-Throughput Settings

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Author Spotlight: Efficiently Eliminating Bacteriophages from Infected Salmonella Cultures Using Lipopolysaccharides
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  • 通过多功能数据分析确定了菌体生物学和特异性的关键原则.
  • 结论:

    • 多目标机器学习为设计具有复杂,定制功能的蛋白质提供了可行的策略.
    • T7菌体系统表现出显著的可调性,为蛋白质特异性提供了洞察力.
    • 开发的建模框架可用于其他蛋白质和生物系统的多目标设计.
    • 这项工作促进了对蛋白质工程中的多功能景观的理解.