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相关概念视频

Lagging Strand Synthesis01:59

Lagging Strand Synthesis

54.4K
During replication, the complementary strands in double-stranded DNA are synthesized at different rates. Replication first begins on the leading strand. Replication starts later, occurs more slowly, and proceeds discontinuously on the lagging strand.
There are several major differences between synthesis of the leading strand and synthesis of the lagging strand. 1) Leading strand synthesis happens in the direction of replication fork opening, whereas lagging strand synthesis happens in the...
54.4K
Restarting Stalled Replication Forks02:37

Restarting Stalled Replication Forks

5.9K
DNA replication is initiated at sites containing predefined DNA sequences known as origins of replication. DNA is unwound at these sites by the minichromosome maintenance (MCM) helicase and other factors such as Cdc45 and the associated GINS complex.The unwound single strands are protected by replication protein A (RPA) until DNA polymerase starts synthesizing DNA at the 5’ end of the strand in the same direction as the replication fork. To prevent the replication fork from falling apart,...
5.9K
Translesion DNA Polymerases02:10

Translesion DNA Polymerases

10.2K
Translesion (TLS) polymerases rescue stalled DNA polymerases at sites of damaged bases by replacing the replicative polymerase and installing a nucleotide across the damaged site. Doing so, TLS allows additional time for the cell to repair the damage before resuming regular DNA replication.
TLS polymerases are found in all three domains of life - archaea, bacteria, and eukaryotes. Of the different classes of TLS polymerases, members of the Y family are fitted with specialized structures that...
10.2K
The Replisome03:01

The Replisome

35.1K
DNA replication is carried out by a large complex of proteins that act in a coordinated matter to achieve high-fidelity DNA replication. Together this complex is known as the DNA replication machinery or the replisome.
The synthesis of the leading and lagging strands is a highly coordinated process. To explain this, the “Trombone model” was proposed by Bruce Alberts in 1980. The DNA loop formation starts when a primer is synthesized on the parent lagging strand. The loop grows with...
35.1K
Nucleosome Remodeling02:54

Nucleosome Remodeling

9.6K
Nucleosomes are the basic units of chromatin compaction. Each nucleosome consists of the DNA bound tightly around a histone core, which makes the DNA inaccessible to DNA binding proteins such as DNA polymerase and RNA polymerase. Hence, the fundamental problem is to ensure access to DNA when appropriate, despite the compact and protective chromatin structure.
Nucleosome remodeling complex
Eukaryotic cells have specialized enzymes called ATP-dependent nucleosome remodeling enzymes. These enzymes...
9.6K
Proofreading01:31

Proofreading

6.7K
Synthesis of new DNA molecules is carried out by the enzyme DNA polymerase, which adds nucleotides on the daughter strand complementary to the template DNA strand. DNA polymerase has a higher affinity to add the correct base and ensures fidelity during DNA replication. Furthermore,  it exhibits proofreading activity during replication, using an exonuclease domain that cuts off incorrect nucleotides from the nascent DNA strand.
Errors During Replication are Corrected by the DNA Polymerase...
6.7K

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相关实验视频

Updated: Sep 19, 2025

Plasmid-derived DNA Strand Displacement Gates for Implementing Chemical Reaction Networks
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Plasmid-derived DNA Strand Displacement Gates for Implementing Chemical Reaction Networks

Published on: November 25, 2015

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控制DNA-RNA链位移动力学与基分布.

Eryk J Ratajczyk1,2,3, Jonathan Bath2,3, Petr Šulc4,5,6

  • 1Department of Physics, Rudolf Peierls Centre for Theoretical Physics, University of Oxford, Oxford OX1 3PU, United Kingdom.

Proceedings of the National Academy of Sciences of the United States of America
|June 6, 2025
PubMed
概括

基因编辑技术的关键是DNA-RNA混合链的移位,例如CRISPR-Cas9. 基分布显著影响反应速度,允许精确控制DNA-RNA相互作用.

关键词:
克里斯普尔是什么意思?克里斯普尔是什么意思?DNARNA杂交的混合物粗粒模型的粗粒模型核酸核酸是一种核酸.子的移位 子的移位

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Real-time Observation of the DNA Strand Exchange Reaction Mediated by Rad51
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Real-time Observation of the DNA Strand Exchange Reaction Mediated by Rad51

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Dual DNA Rulers to Study the Mechanism of Ribosome Translocation with Single-Nucleotide Resolution
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Dual DNA Rulers to Study the Mechanism of Ribosome Translocation with Single-Nucleotide Resolution

Published on: July 8, 2019

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相关实验视频

Last Updated: Sep 19, 2025

Plasmid-derived DNA Strand Displacement Gates for Implementing Chemical Reaction Networks
07:50

Plasmid-derived DNA Strand Displacement Gates for Implementing Chemical Reaction Networks

Published on: November 25, 2015

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Real-time Observation of the DNA Strand Exchange Reaction Mediated by Rad51
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Dual DNA Rulers to Study the Mechanism of Ribosome Translocation with Single-Nucleotide Resolution
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Dual DNA Rulers to Study the Mechanism of Ribosome Translocation with Single-Nucleotide Resolution

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科学领域:

  • 分子生物学分子生物学
  • 生物物理学的生物物理.
  • 生物化学 生物化学

背景情况:

  • DNA-RNA混合链的移位对生物过程和合成系统至关重要.
  • 控制这些反应对于CRISPR-Cas9基因编辑等应用至关重要.

研究的目的:

  • 为了研究基分布对DNA-RNA链位移动力学的影响.
  • 为了比较DNA-RNA混合体与全DNA系统的序列依赖性.
  • 验证用于预测这些反应的计算模型.

主要方法:

  • 多尺度建模与实验性链位移测试相结合.
  • 对RNA入侵dDNA和DNA入侵杂交双重体的反应动态的表征.
  • 使用oxNA粗粒度模型并开发一个简单的运动模型.

主要成果:

  • 移位域内的基分布强烈影响DNA-RNA反应动力学,这种动力学是这些杂交物独有的.
  • 通过重新分配基,可以达到超过四个数量级的依赖序列的反应速率.
  • 与DNA-RNA杂交物相比,全DNA链位移显示出可预测的但较弱的序列依赖性.
  • oxNA模型准确地重现了实验趋势;开发了一个预测性动力模型.

结论:

  • 由于基分布效应,DNA-RNA链位移提供了比所有DNA系统更大的热力学和动力学控制.
  • 基分布可能是自然R循环形成和CRISPR指导RNA功能的关键因素.