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相关概念视频

Real Time RT-PCR02:57

Real Time RT-PCR

56.9K
Real-time reverse transcription-polymerase chain reaction, or Real-time RT-PCR, is an analytical tool used to determine the expression level of target genes. The method involves converting mRNA to complementary DNA with the help of an enzyme known as reverse transcriptase, followed by the PCR amplification of the cDNA. These two processes can be performed simultaneously in a single tube or separately as a two-step reaction.
The real-time quantification of the number of amplified products is...
56.9K
Diversity in Cell Signaling Responses01:22

Diversity in Cell Signaling Responses

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The physiological function of a cell and cellular communication are outcomes of a range of extrinsic signals, intracellular signaling pathways, and cellular responses. No two cell types express the same repertoire of signaling components. Receptors are highly selective for their cognate ligands, but once activated, they can alter multiple cellular processes such as DNA transcription, protein synthesis, and metabolic activity. 
Graded and Abrupt Responses
Some signaling systems generate...
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Regulation of Expression at Multiple Steps01:23

Regulation of Expression at Multiple Steps

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The gene expression in cells is regulated at different stages: (i) transcription, (ii) RNA processing, (iii) RNA localization, and (iv) translation. Transcriptional regulation is mediated by regulatory proteins such as transcription factors, activators, or repressors—these control gene expression by initiating or inhibiting the transcription of genes. Once a precursor or pre-mRNA is produced, it undergoes post-transcriptional modification, including 5' capping, splicing, and the...
875
What is Gene Expression?01:36

What is Gene Expression?

8.5K
A gene is a stretch of DNA that serves as the blueprint for functional RNAs and proteins. Since DNA is comprised  of nucleotides and proteins are comprised of amino acids, a mediator is required to convert the information encoded in DNA into proteins. This mediator is the messenger RNA (mRNA). mRNA copies the blueprint from DNA by a process called transcription. In eukaryotes, transcription occurs in the nucleus by complementary base-pairing with the DNA template. The mRNA is then...
8.5K
Enzyme Kinetics01:19

Enzyme Kinetics

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Enzymes speed up reactions by lowering the activation energy of the reactants. The speed at which the enzyme turns reactants into products is called the rate of reaction. Several factors impact the rate of reaction, including the number of available reactants. Enzyme kinetics is the study of how an enzyme changes the rate of a reaction.
Scientists typically study enzyme kinetics with a fixed amount of enzyme in the controlled environment of a test tube. When more reactant, or substrate, is...
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Regulation of Expression Occurs at Multiple Steps02:24

Regulation of Expression Occurs at Multiple Steps

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Gene expression can be regulated at almost every step from gene to protein. Transcription is the step that is most commonly regulated. This involves the binding of proteins to short regulatory sequences on the DNA. This association can either promote or inhibit the transcription of a gene associated with the respective sequence.
Transcription results in the generation of precursor (pre-mRNA) that consists of both exons and introns, which needs further processing before being translated to a...
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相关实验视频

Updated: Jun 12, 2025

Measuring the Kinetics of mRNA Transcription in Single Living Cells
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Measuring the Kinetics of mRNA Transcription in Single Living Cells

Published on: August 25, 2011

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diffGEK:差异性基因表达动力学

Melania Barile1,2, Shirom Chabra1, Tomoya Isobe1

  • 1Department of Haematology, Wellcome-MRC Cambridge Stem Cell Institute, University of Cambridge, Jeffrey Cheah Biomedical Centre, CB2 0AW, United Kingdom Cambridge.

Bioinformatics (Oxford, England)
|June 11, 2025
PubMed
概括

一种新的方法,diffGEK,通过模拟细胞分化过程中转录,剪接和降解速率的平稳变化,使得在不同条件下对基因表达动力学进行比较. 这种方法揭示了传统分析遗漏的隐藏机制差异.

科学领域:

  • 单细胞RNA测序分析分析
  • 计算生物学是一种计算生物学.
  • 基因表达的动态 基因表达的动态

背景情况:

  • 细胞身份源于不同的基因表达动力学,包括转录,拼接和降解率.
  • 当前的RNA速度模型往往过度简化或过度参数化这些运动速率,限制了它们的比较功率.
  • 准确估计转录动力学对于理解细胞状态转换至关重要.

研究的目的:

  • 开发一种新的计算方法 (diffGEK),用于在不同的生物条件下比较转录,拼接和降解速率.
  • 克服现有的RNA速度模型的局限性,允许速度在差异化轨迹上平稳变化.
  • 为了识别具有改变运动速率的基因,这些基因可能会被常规表达分析遗漏.

主要方法:

  • 开发了diffGEK,这种方法将转录速率建模为平滑的差异化函数.
  • 应用diffGEK来分析Jak2 V617F突变与野生类型小鼠中的红色形成.
  • 应用 diffGEK 来分析 Ezh2 淘汰赛与野生类型小鼠中的骨髓形成.

主要成果:

  • 在比较条件之间识别了具有改变转录,拼接或降解率的特定基因.
  • 观察到不同运动速率的补偿变化,可以掩盖标准分析中的动态表达变化.

更多相关视频

Determining Genome-wide Transcript Decay Rates in Proliferating and Quiescent Human Fibroblasts
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Determining Genome-wide Transcript Decay Rates in Proliferating and Quiescent Human Fibroblasts

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Probing mRNA Kinetics in Space and Time in Escherichia coli using Two-Color Single-Molecule Fluorescence In Situ Hybridization
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Probing mRNA Kinetics in Space and Time in Escherichia coli using Two-Color Single-Molecule Fluorescence In Situ Hybridization

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相关实验视频

Last Updated: Jun 12, 2025

Measuring the Kinetics of mRNA Transcription in Single Living Cells
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Measuring the Kinetics of mRNA Transcription in Single Living Cells

Published on: August 25, 2011

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Determining Genome-wide Transcript Decay Rates in Proliferating and Quiescent Human Fibroblasts
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Determining Genome-wide Transcript Decay Rates in Proliferating and Quiescent Human Fibroblasts

Published on: January 2, 2018

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Probing mRNA Kinetics in Space and Time in Escherichia coli using Two-Color Single-Molecule Fluorescence In Situ Hybridization
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Probing mRNA Kinetics in Space and Time in Escherichia coli using Two-Color Single-Molecule Fluorescence In Situ Hybridization

Published on: July 30, 2020

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  • 证明了diffGEK在揭示基因表达动态中的机制差异方面的实用性.
  • 结论:

    • diffGEK为基于转录动力学的比较表达分析提供了一个强大的管道.
    • 这种方法揭示了传统方法错过的机制差异.
    • 该方法在各种生物医学研究问题上分析单细胞表达数据时具有广泛的适用性.