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Riboswitches01:56

Riboswitches

8.1K
Riboswitches are non-coding mRNA domains that regulate the transcription and translation of downstream genes without the help of proteins. Riboswitches bind directly to a metabolite and can form unique stem-loop or hairpin structures in response to the amount of the metabolite present. They have two distinct regions – a metabolite-binding aptamer and an expression platform.
The aptamer has high specificity for a particular metabolite which allows riboswitches to specifically regulate...
8.1K
Types of RNA01:23

Types of RNA

63.4K
Overview
Three main types of RNA are involved in protein synthesis: messenger RNA (mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA). These RNAs perform diverse functions and can be broadly classified as protein-coding or non-coding RNA. Non-coding RNAs play important roles in the regulation of gene expression in response to developmental and environmental changes. Non-coding RNAs in prokaryotes can be manipulated to develop more effective antibacterial drugs for human or animal use.
RNA...
63.4K
Regulation of Expression at Multiple Steps01:23

Regulation of Expression at Multiple Steps

875
The gene expression in cells is regulated at different stages: (i) transcription, (ii) RNA processing, (iii) RNA localization, and (iv) translation. Transcriptional regulation is mediated by regulatory proteins such as transcription factors, activators, or repressors—these control gene expression by initiating or inhibiting the transcription of genes. Once a precursor or pre-mRNA is produced, it undergoes post-transcriptional modification, including 5' capping, splicing, and the...
875
Regulation of Expression Occurs at Multiple Steps02:24

Regulation of Expression Occurs at Multiple Steps

22.5K
Gene expression can be regulated at almost every step from gene to protein. Transcription is the step that is most commonly regulated. This involves the binding of proteins to short regulatory sequences on the DNA. This association can either promote or inhibit the transcription of a gene associated with the respective sequence.
Transcription results in the generation of precursor (pre-mRNA) that consists of both exons and introns, which needs further processing before being translated to a...
22.5K
Covalently Linked Protein Regulators02:04

Covalently Linked Protein Regulators

6.8K
Proteins can undergo many types of post-translational modifications, often in response to changes in their environment. These modifications play an important role in the function and stability of these proteins. Covalently linked molecules include functional groups, such as methyl, acetyl, and phosphate groups, and also small proteins, such as ubiquitin. There are around 200 different types of covalent regulators that have been identified.
These groups modify specific amino acids in a protein....
6.8K
Transcription Attenuation in Prokaryotes02:42

Transcription Attenuation in Prokaryotes

15.2K
Transcriptional attenuation occurs when RNA transcription is prematurely terminated due to the formation of a terminator mRNA hairpin structure.  Bacteria use these hairpins to regulate the transcription process and control the synthesis of several amino acids including histidine, lysine, threonine, and phenylalanine. Transcription attenuation takes place in the non-coding regions of mRNA.
There are several different mechanisms used to attenuate transcription. In ribosome mediated...
15.2K

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Structurally distinct manganese-sensing riboswitch aptamers regulate different expression platform architectures.

bioRxiv : the preprint server for biology·2025
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A riboswitch-controlled TerC family transporter Alx tunes intracellular manganese concentration in <i>Escherichia coli</i> at alkaline pH.

Journal of bacteriology·2024
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相关实验视频

Updated: Jun 14, 2025

Nanomanipulation of Single RNA Molecules by Optical Tweezers
06:59

Nanomanipulation of Single RNA Molecules by Optical Tweezers

Published on: August 20, 2014

14.8K

结构上是不同的感应的 рибо交换机阿马调节不同的表达平台架构.

Christine Stephen1, Danea E Palmer1, Clarisa Bautista1

  • 1Department of Chemistry and Biochemistry, University of California San Diego, La Jolla, CA 92093, United States.

Nucleic acids research
|June 11, 2025
PubMed
概括

基 рибо开关可以保护细菌免受毒性影响. 这项研究揭示了这些RNA传感器如何折叠和检测,甚至在合成过程中,并响应pH值的变化.

科学领域:

  • 分子生物学分子生物学
  • 生物化学 生物化学
  • 微生物学 微生物学

背景情况:

  • 带转换器通过控制出口者的表达来调节细菌的恒常性.
  • 现有的孤立体的结构数据不能完全解释体诱导的构造变化和与表达平台的通信.

研究的目的:

  • 为了研究 Escherichia coli 中两种不同的 рибо开关 (mntP 和 alx) 的折叠动态和感应机制.
  • 阐明pH在调节 рибо开关功能的作用.
  • 了解这些 рибо开关如何区分的度和pH值作为环境线索.

主要方法:

  • 协同转录RNA化学探测被用于可视化动态RNA折叠中间体.
  • 单核酸分辨率分析被用来确定转录期间的核糖切换事件的时间.
  • 进行了mntP和alx рибо开关的比较分析,以确定折叠和pH依赖性的差异.

主要成果:

  • 离子采样由RNA发生在完成aptamer合成和折叠之前.
  • 在单核酸分辨率下确定了依赖的核交换的精确转录窗口.
  • 发现了alx和mntP рибо开关的折叠路径中的关键差异.
  • 描述了Riboswitch特定的pH效应,揭示了差异感应机制.

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Exploring Sequence Space to Identify Binding Sites for Regulatory RNA-Binding Proteins
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Exploring Sequence Space to Identify Binding Sites for Regulatory RNA-Binding Proteins

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MS2-Affinity Purification Coupled with RNA Sequencing in Gram-Positive Bacteria
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MS2-Affinity Purification Coupled with RNA Sequencing in Gram-Positive Bacteria

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相关实验视频

Last Updated: Jun 14, 2025

Nanomanipulation of Single RNA Molecules by Optical Tweezers
06:59

Nanomanipulation of Single RNA Molecules by Optical Tweezers

Published on: August 20, 2014

14.8K
Exploring Sequence Space to Identify Binding Sites for Regulatory RNA-Binding Proteins
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Exploring Sequence Space to Identify Binding Sites for Regulatory RNA-Binding Proteins

Published on: August 9, 2019

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MS2-Affinity Purification Coupled with RNA Sequencing in Gram-Positive Bacteria
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MS2-Affinity Purification Coupled with RNA Sequencing in Gram-Positive Bacteria

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结论:

  • 细菌核转换器表现出动态折叠过程,金属离子结合在RNA合成的早期开始.
  • mntP和alx核糖开关具有不同的折叠机制,对pH值有不同的反应,从而实现细微的环境传感.
  • 这项工作为细菌适应不同和pH条件的复杂机制提供了新的见解.