揭示人类肠道生态系统的单个氨基酸多态性
Kewen Xue1,2, Panpan Wang3, Qixiao Lin1,2
1Guangdong Provincial Engineering Research Center of Molecular Imaging, The Fifth Affiliated Hospital of Sun Yat-sen University, and Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Zhuhai 519000, China.
Journal of proteome research
|June 11, 2025
概括
单氨基酸多态性 (SAP) 揭示了肠道微生物群中的新型微生物功能和适应性策略. 这些蛋白质变异与宿主疾病相关,如炎症性肠病和1型糖尿病.
科学领域:
- 微生物学 微生物学
- 基因组学就是基因组学.
- 蛋白质组学是指蛋白质组学.
背景情况:
- 单核酸多态 (SNP) 是常见的遗传变异,但并不完全代表蛋白质水平的变化.
- 单氨基酸多态 (SAP),由非同义SNP产生的,影响蛋白质功能和适应,但在肠道微生物群中未得到充分研究.
研究的目的:
- 在人类肠道生态系统中对SAP进行大规模分析.
- 开发一种计算管道,用于检测超蛋白质体中的蛋白质变异.
主要方法:
- 分析了992个已发表的人类元蛋白质组.
- 开发一个用于SAP检测的计算管道.
主要成果:
- 确定了肠道微生物中的多样化的SAP模式,揭示了已知的和新的功能和适应性策略.
- 在最外围的细胞外,运动结构和核糖体中发现了微生物SAP丰富.
- 在代谢途径中观察到融合的SAP模式,特别是在碳水化合物代谢中 (糖的形成和异构化).
- 证明了微生物和宿主突变模式的改变,与炎症性肠道疾病和1型糖尿病有显著的相关性.
结论:
- 肠道微生物SAP具有重要的功能和临床影响.
- 在肠道生态系统中,SAP在宿主微生物相互作用和适应中发挥作用.
相关概念视频
Single Nucleotide Polymorphisms-SNPs
14.8K
A single nucleotide polymorphism or SNP is a single nucleotide variation at a specific genomic position in a large population. It is the most prevalent type of sequence variation found in the human genome. Point mutations that occur in more than 1% of the population qualify as SNPs. These are present once every 1000 nucleotides on an average in the human genome. Replacement of a purine with another purine (A/G) or a pyrimidine with another pyrimidine (C/T) is known as a transition. In contrast,...
14.8K
What is Monogastric Digestion?
70.9K
The human body contains a monogastric digestive system. In a monogastric digestive system, the stomach only contains one chamber in which it digests food. Several other animal species also have monogastric digestive systems, including pigs, horses, dogs, and birds. This chapter, however, focuses on the human digestive system.
70.9K
From DNA to Protein
18.1K
The flow of genetic information in cells from DNA to mRNA to protein is described by the central dogma, which states that genes specify the sequence of mRNAs, which in turn specify the sequence of amino acids making up all proteins. The decoding of one molecule to another is performed by specific proteins and RNAs. Because the information stored in DNA is so central to cellular function, it makes intuitive sense that the cell would make mRNA copies of this information for protein synthesis...
18.1K
Anatomy of the Intestines
71.6K
Although digestion of proteins, carbohydrates, and lipids may begin in the stomach, it is completed in the intestine. The absorption of nutrients, water, and electrolytes from food and drink also occurs in the intestine. The intestines can be divided into two structurally distinct organs—the small and large intestines.
Small Intestines
The small intestine is an ~7 meter-long tube with an inner diameter of just 2.5 cm. Since most nutrients are absorbed here, the inner lining of the...
Small Intestines
The small intestine is an ~7 meter-long tube with an inner diameter of just 2.5 cm. Since most nutrients are absorbed here, the inner lining of the...
71.6K
Multi-species Conserved Sequences
3.9K
Next-generation sequencing technologies have created large genomic databases of a variety of animals and plants. Ever since the human genome project was completed, scientists studied the genome of primates, mammals, and other phylogenetically distant living beings. Such large-scale studies have provided new insights into the evolutionary relationship between organisms.
Although the genome of each species varies greatly from each other, a few sequences are highly conserved. Such conserved...
Although the genome of each species varies greatly from each other, a few sequences are highly conserved. Such conserved...
3.9K
Comparing Copy Number Variations and SNPs
17.6K
Sequencing of the human genome has opened up several best-kept secrets of the genome. Scientists have identified thousands of genome variations that exist within a population. These variations can be a single nucleotide or a larger chromosomal variation.
Copy number variations or CNVs are the structural variations that cover more than 1kb of DNA sequence. The single nucleotide polymorphism (SNP), on the other hand, is a single nucleotide change or a point mutation that is found in more than 1%...
Copy number variations or CNVs are the structural variations that cover more than 1kb of DNA sequence. The single nucleotide polymorphism (SNP), on the other hand, is a single nucleotide change or a point mutation that is found in more than 1%...
17.6K


