通过使用时间编码样本多重复合来增加质谱的吞吐量
bioRxiv : the preprint server for biology
|June 12, 2025
概括
研究人员开发了timePlex,这是一种提高液体染色体质谱 (LC-MS) 蛋白质组学样本分析速度的新方法. 通过分级样本分离,timePlex可以组合地缩放吞吐量,从而使单个细胞的敏感分析成为可能,并显著提高了蛋白质组学效率.
科学领域:
- 蛋白质组学是指蛋白质组学.
- 分析化学 分析化学
- 生物技术是生物技术.
背景情况:
- 液态染色体质谱法 (LC-MS) 为分析物量化提供了高灵敏度,但面临着吞吐量限制.
- 目前的多重复合策略,如plexDIA,通过在质域中进行多重复合来线性增加吞吐量.
- 存在一种方法的需要,这种方法可以将蛋白质组学吞吐量相结合地扩大到线性增长之外.
研究的目的:
- 开发一种新的时间域多重复合策略,称为timePlex,以补充现有的质域多重复合.
- 在基于LC-MS的蛋白质组学中实现样本吞吐量的组合缩放.
- 为了证明timePlex对敏感,高通量蛋白质组分析的有效性.
主要方法:
- 开发了timePlex,这是一种在时间域中分离样本周期的分离和重叠方法.
- 结合时间Plex与plexDIA (质域多重复合) 进行正交,组合多重复合.
- 使用3-timePlex和3-plexDIA证明了9个样本的多重复合,使用3-timePlex和9-plexDIA证明了27个样本的多重复合.
主要成果:
- 使用27倍复数 (3倍复数和9倍复数DIA) 实现了每天超过500个样本的吞吐量.
- 证明timePlex支持敏感分析,包括单细胞蛋白质组学.
- 展示了通过结合时间域和质域多重复合来增加吞吐量.
结论:
- timePlex是LC-MS蛋白质组学有效的无标签复杂化方法.
- 时间Plex和plexDIA的组合使得蛋白质组学吞吐量的组合扩展成为可能.
- 预计未来的吞吐量增加超过每天1000个样本与这种综合方法.
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