协调的MlaC子域运动调节了连接体结合和运输
Angshu Dutta1, Smit Patel1, Shankar Prasad Kanaujia1
1Department of Biosciences and Bioengineering, Indian Institute of Technology Guwahati, Guwahati, Assam 781039, India.
Computational and structural biotechnology journal
|June 12, 2025
概括
脂的MlaC蛋白传输维持了细菌外膜的完整性. 分子模拟显示了MlaC.
科学领域:
- 细菌细胞外生物发生.
- 膜蛋白的结构和动力学
- 分子生物物理学的分子生物物理学.
背景情况:
- MlaC蛋白对于格拉姆阴性细菌的脂运输至关重要.
- 这种运输保持了外膜的不对称性和完整性.
- 尚不清楚MlaC的结构和动态联结特性.
研究的目的:
- 调查MlaC.的形状格局和带结合机制.
- 使用计算方法阐明MlaC的动态行为.
主要方法:
- 用各种脂物进行全面的分子对接研究.
- 在不同联结状态下对MlaC的分子动力学模拟 (13个系统,每个1000 ns).
- 结合口袋体积变化和蛋白质动态的分析.
主要成果:
- 对于脂,MlaC表现出基质大小和结合平面偏好.
- Apo 开放的 MlaC 状态在构造上比全开放的状态更灵活.
- 确定了不同的全球和本地运动,包括 (反) 相关的动作.
- 一个意想不到的MlaC晶体状态被发现,增加了灵活性洞察力.
结论:
- MlaC的形状灵活性和动态是其在脂运输中的功能的关键.
- 了解MlaC的动态景观,可以了解如何保持细菌膜的完整性.
- 这些发现为研究协调运动和MlaC在细胞过程中的作用开辟了新的途径.
相关概念视频
Cooperative Allosteric Transitions
7.9K
Cooperative allosteric transitions can occur in multimeric proteins, where each subunit of the protein has its own ligand-binding site. When a ligand binds to any of these subunits, it triggers a conformational change that affects the binding sites in the other subunits; this can change the affinity of the other sites for their respective ligands. The ability of the protein to change the shape of its binding site is attributed to the presence of a mix of flexible and stable segments in the...
7.9K
Ligand-gated Ion Channels
12.3K
Ligand-gated ion channels are transmembrane proteins with a channel for ions to pass through and a binding site for a ligand. The channel opens only when a ligand attaches to the binding site.
Three Subfamilies of Ligand-gated Ion Channels
Ligand-gated ion channels fall into three subfamilies. The 'Cys-loop' includes the nicotinic acetylcholine receptors, γ-aminobutyric acid (GABA), glycine, and 5-hydroxytryptamine receptors. The second one is the 'Pore-loop' channels that...
Three Subfamilies of Ligand-gated Ion Channels
Ligand-gated ion channels fall into three subfamilies. The 'Cys-loop' includes the nicotinic acetylcholine receptors, γ-aminobutyric acid (GABA), glycine, and 5-hydroxytryptamine receptors. The second one is the 'Pore-loop' channels that...
12.3K
Ligand Binding and Linkage
4.8K
Allosteric proteins have more than one ligand binding site; the binding of a ligand to any of these sites influences the binding of ligands to the other sites. When a protein is allosteric, its binding sites are called coupled or linked. In the case of enzymes, the site that binds to the substrate is known as the active site and the other site is known as the regulatory site. When a ligand binds to the regulatory site, this leads to conformational changes in the protein that can influence...
4.8K
Ligand-Gated Ion Channel Receptor: Gating Mechanism
2.2K
Ligand-gated ion channels are transmembrane proteins that play a vital role in intercellular communication and functions of the nervous system. They allow the influx of ions across the membrane once the neurotransmitter binds, allowing the subsequent transmission of electrical excitation across the neurons. Other ligand-gated ion channels, like the γ-aminobutyric acid (GABA) receptor, permit anions like chloride into the cells on the binding of the GABA molecule. Their entry into the cell...
2.2K
Ligand Binding Sites
12.8K
Proteins are dynamic macromolecules that carry out a wide variety of essential processes; however, the activities of most proteins depend on their interactions with other molecules or ions, known as ligands.
Protein-ligand interactions are quite specific; even though numerous potential ligands surround a cellular protein at any given time, only a particular ligand can bind to that protein. Moreover, a ligand binds only to a dedicated area on the surface of the protein, known as the...
Protein-ligand interactions are quite specific; even though numerous potential ligands surround a cellular protein at any given time, only a particular ligand can bind to that protein. Moreover, a ligand binds only to a dedicated area on the surface of the protein, known as the...
12.8K
Assembly of Signaling Complexes
5.7K
Multiprotein signaling complexes are formed in a dynamic process involving protein-protein interactions at the cytoplasmic domain of transmembrane receptors or enzymatic and non-enzymatic proteins associated with the receptor. These complexes ensure the activation and propagation of intracellular signals that regulate cell functions.
Interaction domains in cell signaling
Interaction domains recognize exposed features of their binding partners containing post-translationally modified sequences,...
Interaction domains in cell signaling
Interaction domains recognize exposed features of their binding partners containing post-translationally modified sequences,...
5.7K


