Jove
Visualize
联系我们
JoVE
x logofacebook logolinkedin logoyoutube logo
关于 JoVE
概览领导团队博客JoVE 帮助中心
作者
出版流程编辑委员会范围与政策同行评审常见问题投稿
图书馆员
用户评价订阅访问资源图书馆顾问委员会常见问题
研究
JoVE JournalMethods CollectionsJoVE Encyclopedia of Experiments存档
教育
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab Manual教师资源中心教师网站
使用条款与条件
隐私政策
政策

相关概念视频

Mechanistic Models: Compartment Models in Algorithms for Numerical Problem Solving01:29

Mechanistic Models: Compartment Models in Algorithms for Numerical Problem Solving

45
Mechanistic models play a crucial role in algorithms for numerical problem-solving, particularly in nonlinear mixed effects modeling (NMEM). These models aim to minimize specific objective functions by evaluating various parameter estimates, leading to the development of systematic algorithms. In some cases, linearization techniques approximate the model using linear equations.
In individual population analyses, different algorithms are employed, such as Cauchy's method, which uses a...
45
Signal and System01:26

Signal and System

629
A signal x(t) is a set of data or a time function representing a variable of interest. Signals typically convey information about a phenomenon, such as atmospheric temperature, humidity, human voice, television images, a dog's bark, or birdsongs. More generally, a signal can be a function of more than one independent variable. For instance, images depend on horizontal and vertical positions and can be regarded as two-dimensional signals. However, this text will focus on one-dimensional...
629
State Space Representation01:27

State Space Representation

171
The frequency-domain technique, commonly used in analyzing and designing feedback control systems, is effective for linear, time-invariant systems. However, it falls short when dealing with nonlinear, time-varying, and multiple-input multiple-output systems. The time-domain or state-space approach addresses these limitations by utilizing state variables to construct simultaneous, first-order differential equations, known as state equations, for an nth-order system.
Consider an RLC circuit, a...
171
Mechanistic Models: Compartment Models in Individual and Population Analysis01:23

Mechanistic Models: Compartment Models in Individual and Population Analysis

32
Mechanistic models are utilized in individual analysis using single-source data, but imperfections arise due to data collection errors, preventing perfect prediction of observed data. The mathematical equation involves known values (Xi), observed concentrations (Ci), measurement errors (εi), model parameters (ϕj), and the related function (ƒi) for i number of values. Different least-squares metrics quantify differences between predicted and observed values. The ordinary least...
32
Linear Approximation in Time Domain01:21

Linear Approximation in Time Domain

70
Nonlinear systems often require sophisticated approaches for accurate modeling and analysis, with state-space representation being particularly effective. This method is especially useful for systems where variables and parameters vary with time or operating conditions, such as in a simple pendulum or a translational mechanical system with nonlinear springs.
For a simple pendulum with a mass evenly distributed along its length and the center of mass located at half the pendulum's length,...
70
Classification of Systems-I01:26

Classification of Systems-I

177
Linearity is a system property characterized by a direct input-output relationship, combining homogeneity and additivity.
Homogeneity dictates that if an input x(t) is multiplied by a constant c, the output y(t) is multiplied by the same constant. Mathematically, this is expressed as:
177

您也可能阅读

相关文章

通过共同作者、期刊和引用图与本文相关的文章。

排序
Same author

A physics-informed alternative to Richardson-Lucy deconvolution across SNR regimes without iteration cutoffs.

Nature communications·2026
Same author

Mitochondria directly interact with the nuclear pore complex.

Nature·2026
Same author

Stochastic colonization and host-to-host transmission shape gut bacterial variability.

bioRxiv : the preprint server for biology·2026
Same author

Resolving fluorescently labeled species using highly multiplexed spectral FLIM.

Scientific reports·2026
Same author

Simulation-based inference captures non-Markovian effects as exemplified in protein production kinetics through cell division.

Proceedings of the National Academy of Sciences of the United States of America·2026
Same author

Substrate-interacting pore loops of two ATPase subunits determine the degradation efficiency of the 26S proteasome.

Nature communications·2026

相关实验视频

Updated: Jun 13, 2025

Structure-Based Simulation and Sampling of Transcription Factor Protein Movements along DNA from Atomic-Scale Stepping to Coarse-Grained Diffusion
09:17

Structure-Based Simulation and Sampling of Transcription Factor Protein Movements along DNA from Atomic-Scale Stepping to Coarse-Grained Diffusion

Published on: March 1, 2022

3.1K

一个谨慎的用户指南,用于将HMM应用于物理系统.

Max Schweiger, Ayush Saurabh, Steve Pressé

    ArXiv
    |June 12, 2025
    PubMed
    概括

    应用到连续物理系统的隐藏马尔科夫模型 (HMM) 可能会产生误导性的结果. 推断状态往往反映模型选择,而不是物理现实,需要仔细应用和先进的HMMs.

    科学领域:

    • 物理系统分析 物理系统分析
    • 计算物理 计算物理
    • 时间序列建模时间序列建模

    背景情况:

    • 连续的自然系统通过空间和时间进化.
    • 为离散数据开发的隐藏马尔科夫模型 (HMM) 广泛用于物理系统中的时间序列分析.
    • 对连续数据的离散框架的应用引发了解释性问题.

    研究的目的:

    • 调查使用离散时间,离散状态隐藏马尔科夫模型 (HMMs) 来分析不断演变的物理系统数据的含义.
    • 确定HMM为物理系统提供可解释结果的条件.
    • 探索测量协议和建模选择对HMM推理的影响.

    主要方法:

    • 在有效潜力中使用朗格文动态生成合成数据.
    • 使用隐藏马尔科夫模型 (HMMs) 分析合成数据.
    • 探索数据采集方案如何影响HMM恢复状态.

    主要成果:

    • 在HMM中离散状态近似是一种抽象,推断状态通常反映模型选择,而不是潜在的物理潜在特征.
    • 通过调整数据采集方案,可以操纵HMM推断状态.
    • 即使在单个潜力井中的系统中,也可以恢复误导性可重现的中间状态.

    更多相关视频

    Optical Tweezers to Study RNA-Protein Interactions in Translation Regulation
    12:26

    Optical Tweezers to Study RNA-Protein Interactions in Translation Regulation

    Published on: February 12, 2022

    4.9K
    Using Three-color Single-molecule FRET to Study the Correlation of Protein Interactions
    11:22

    Using Three-color Single-molecule FRET to Study the Correlation of Protein Interactions

    Published on: January 30, 2018

    10.0K

    相关实验视频

    Last Updated: Jun 13, 2025

    Structure-Based Simulation and Sampling of Transcription Factor Protein Movements along DNA from Atomic-Scale Stepping to Coarse-Grained Diffusion
    09:17

    Structure-Based Simulation and Sampling of Transcription Factor Protein Movements along DNA from Atomic-Scale Stepping to Coarse-Grained Diffusion

    Published on: March 1, 2022

    3.1K
    Optical Tweezers to Study RNA-Protein Interactions in Translation Regulation
    12:26

    Optical Tweezers to Study RNA-Protein Interactions in Translation Regulation

    Published on: February 12, 2022

    4.9K
    Using Three-color Single-molecule FRET to Study the Correlation of Protein Interactions
    11:22

    Using Three-color Single-molecule FRET to Study the Correlation of Protein Interactions

    Published on: January 30, 2018

    10.0K

    结论:

    • HMM为时间序列推理提供了一个优雅的数学框架,但由于固有的局限性,在物理建模中需要谨慎应用.
    • 意识到HMM的局限性对于准确的物理解释至关重要.
    • 将HMM推广到连续的空间和时间,以及强大的测量噪声建模,对于物理系统来说很重要.