转录因子结合差异驱动着玉米的转录和表型变异
Mary Galli1, Zongliang Chen1, Tara Ghandour2
1Waksman Institute of Microbiology, Rutgers University, Piscataway, NJ, USA.
Nature plants
|June 12, 2025
概括
这项研究绘制了玉米转录因子 (TF) 结合的地图,揭示了影响作物特征的遗传差异,如开花时间和害虫耐药性. 这些发现为使用植物遗传变异改善农业提供了新的途径.
科学领域:
- 基因组学就是基因组学.
- 植物生物学 植物生物学
- 农业科学 农业科学
背景情况:
- 植物基因组中的调控元素对于作物化和改进至关重要.
- 了解它们的身份,功能和多样性是有限的,阻碍了农业的进步.
- 利用自然或诱导的遗传变异需要更好地描述这些元素.
研究的目的:
- 在两个玉米杂交系中绘制转录因子 (TF) 结合位点的地图.
- 确定线路之间的TF结合的差异,并将它们与基因表达和特征相关联.
- 通过基因组编辑来验证监管区域的功能.
主要方法:
- 在两个玉米杂交系的30个家族中对200个TF的转录因子结合进行了映射.
- 比较了TF结合模式,确定了因结构变化而产生的差异.
- 使用CRISPR-Cas9基因编辑来验证控制植物特征的监管区域.
主要成果:
- 在玉米杂交系之间观察到TF结合的广泛差异,主要是由于结构变异.
- 这些TF结合差异与基因表达的变化相关,并解释了复杂的定量特征位置 (例如Vgt1,DICE).
- 克里斯普尔-Cas9编辑证实了调节区域在植物结构和生物耐药性中的功能作用.
结论:
- 创建了一个全面的玉米TF绑定目录,确定了功能性监管区域.
- 这些发现使得监管要素的比较分析成为可能,这对改善作物有价值.
- 这项工作为利用遗传变异提供了基础,以提高农业生产力和弹性.
更多相关视频
相关概念视频
Transcription Factors
75.7K
Tissue-specific transcription factors contribute to diverse cellular functions in mammals. For example, the gene for beta globin, a major component of hemoglobin, is present in all cells of the body. However, it is only expressed in red blood cells because the transcription factors that can bind to the promoter sequences of the beta globin gene are only expressed in these cells. Tissue-specific transcription factors also ensure that mutations in these factors may impair only the function of...
75.7K
General Transcription Factors
5.2K
Tissue-specific transcription factors contribute to diverse cellular functions in mammals. For example, the gene for beta globin, a major component of hemoglobin, is present in all cells of the body. However, it is only expressed in red blood cells because the transcription factors that can bind to the promoter sequences of the beta globin gene are only expressed in these cells. Tissue-specific transcription factors also ensure that mutations in these factors may impair only the function of...
5.2K
Master Transcription Regulators
6.9K
Master transcription regulators are regulatory proteins that are predominantly responsible for regulating the expression of multiple genes. Often these genes work in concert to drive a complex process. Activation of a master transcription regulator can lead to a cascade of transcriptional activation necessary for that outcome. These regulators can directly bind to the regulatory sequences of the various genes involved, or they can indirectly regulate transcription by binding to regulatory...
6.9K
Position-effect Variegation
6.3K
In 1928, a German botanist Emil Heitz observed the moss nuclei with a DNA binding dye. He observed that while some chromatin regions decondense and spread out in the interphase nucleus, others do not. He termed them euchromatin and heterochromatin, respectively. He proposed that the heterochromatin regions reflect a functionally inactive state of the genome. It was later confirmed that heterochromatin is transcriptionally repressed, and euchromatin is transcriptionally active chromatin.
6.3K
Cooperative Binding of Transcription Regulators
6.4K
Transcriptional regulators bind to specific cis-regulatory sequences in the DNA to regulate gene transcription. These cis-regulatory sequences are very short, usually less than ten nucleotide pairs in length. The short length means that there is a high probability of the exact same sequence randomly occurring throughout the genome. Since regulators can also bind to groups of similar sequences, this further increases the chances of random binding. Transcriptional regulators form...
6.4K
Overview of Transposition and Recombination
15.4K
Transposons make up a significant part of genomes of various organisms. Therefore, it is believed that transposition played a major evolutionary role in speciation by changing genome sizes and modifying gene expression patterns. For example, in bacteria, transposition can lead to conferring antibiotic resistance. Movement of transposable elements within the genetic pool of pathogenic bacteria can aid in transfer of antibiotic-resistant genetic elements. In eukaryotes, transposons can carry out...
15.4K


