富含甘氨酸的区域作为灵活的分子,促进hPrP106-145聚合到β-板结构中
Xiaohan Zhang1, Huan Xu1, Huayuan Tang2
1School of Physical Science and Technology, Ningbo University, Ningbo 315211, China.
Journal of chemical information and modeling
|June 13, 2025
概括
用模拟来研究人类蛋白 (hPrP) 聚合,这对病至关重要. 在hPrP碎片中的富含甘氨酸的区域通过提供灵活性来促进早期聚合,作为amyloid形成的分子剂.
科学领域:
- 生物化学 生物化学
- 分子生物学分子生物学
- 计算生物学 计算生物学
背景情况:
- 像CJD这样的子疾病涉及到异常的人类子蛋白 (hPrP) 聚合到粉样沉积物中.
- 早期子聚合的分子机制尚不清楚.
研究的目的:
- 使用模拟研究hPrP片段106-145的结构动力学.
- 阐明特定区域,特别是富含甘氨酸的区域在hPrP聚合中的作用.
主要方法:
- 采用了长时间尺度的原子离散分子动力学 (DMD) 模拟.
- 分析了hPrP106-145.5的单体和二元结构动力学.
主要成果:
- hPrP106-145单体表现出螺旋结构,具有动态β片形成.
- 模化增强β片的形成,特别是在138残留物周围,稳定聚合物.
- 富含甘氨酸的区域 (119-131) 赋予了灵活性,促进了疏水性相互作用和短暂的β片形成.
结论:
- 甘氨酸介导的灵活性对于早期的hPrP聚合核形成至关重要.
- 稳定性和形态之间的平衡会影响聚合.
- 这些发现提供了对子错折和粉样蛋白乱的洞察力,为研究富含甘氨酸的相分离提供了计算框架.
相关概念视频
Protein Folding
117.7K
Overview
117.7K
Protein Organization
136.9K
Overview
136.9K
Protein and Protein Structure
79.1K
Proteins are one of the most abundant organic molecules in living systems and have the most diverse range of functions of all macromolecules. Proteins may be structural, regulatory, contractile, or protective. They may serve in transport, storage, or membranes; or they may be toxins or enzymes. Their structures, like their functions, vary greatly. They are all, however, amino acid polymers arranged in a linear sequence.
A protein's shape is critical to its function. For example, an enzyme...
A protein's shape is critical to its function. For example, an enzyme...
79.1K
Amyloid Fibrils
9.3K
Amyloid fibrils are aggregates of misfolded proteins. Under most circumstances, misfolded proteins are either refolded by chaperone proteins or degraded by the proteasome. However, in the case of a mutation or a disease, these proteins can accumulate to form large clusters and often further assemble to form elongated fibers, called fibrils.
Amyloid deposits were observed as early as 1639 in the liver and the spleen. In 1854, Rudolph Virchow performed iodine staining,...
Amyloid deposits were observed as early as 1639 in the liver and the spleen. In 1854, Rudolph Virchow performed iodine staining,...
9.3K
Protein Folding Quality Check in the RER
3.7K
ER is the primary site for the maturation and folding of soluble and transmembrane secretory proteins. The calnexin cycle is a specific chaperone system that folds and assesses the confirmation of N-glycosylated proteins before they can exit the ER lumen. The primary players of this quality check pipeline are the lectins, ER-resident chaperones, and a glucosyl transferase enzyme. In case the calnexin system in the lumen fails to salvage a misfolded protein, it is transported to the cytoplasm...
3.7K
Molecular Chaperones and Protein Folding
17.8K
The native conformation of a protein is formed by interactions between the side chains of its constituent amino acids. When the amino acids cannot form these interactions, the protein cannot fold by itself and needs chaperones. Notably, chaperones do not relay any additional information required for the folding of polypeptides; the native conformation of a protein is determined solely by its amino acid sequence. Chaperones catalyze protein folding without being a part of the folded protein.
The...
The...
17.8K


