在适当的背景下重新构建目标函数的作用,用于代谢网络建模
Mohammad Mazharul Islam1, William Shao1, Mariska Batavia1
1Department of Biomedical Engineering, University of Virginia, Charlottesville, VA, USA.
Cell systems
|June 20, 2025
概括
代谢网络建模使用客观函数来分析数据并了解细胞代谢. 本评论阐明了客观函数概念,以改善其应用并减少现场混.
科学领域:
- 系统生物学 系统生物学
- 代谢工程是代谢工程.
- 计算生物学 计算生物学
背景情况:
- 目标函数是代谢网络建模中的一个基本概念.
- 它的应用促进了对大数据集的分析,以了解细胞代谢.
- 目前围绕客观函数的讨论可能会导致误解.
研究的目的:
- 在代谢网络建模中重新讨论客观功能的讨论.
- 提高客观函数的感知价值和实用性.
- 澄清与客观函数相关的常见误解.
主要方法:
- 概念分析和对目标函数概念的重构.
- 对当前实践和讨论的文献综述.
- 综合现有知识,提出一个更清晰的框架.
主要成果:
- 对目标函数的作用和定义进行了重新定义的视角.
- 确定当前话语中误解的关键领域.
- 一个为更有效地使用和讨论客观函数提出的框架.
结论:
- 重构目标函数概念可以显著提高其在代谢网络建模中的价值.
- 更清晰的沟通和理解对于推进该领域至关重要.
- 本评论为改善系统生物学中客观函数的应用和解释提供了基础.
相关概念视频
Regulation of Metabolism
9.9K
Cellular needs and conditions vary from cell to cell and change within individual cells over time. For example, the required enzymes and energetic demands of stomach cells are different from those of fat storage cells, skin cells, blood cells, and nerve cells. Furthermore, a digestive cell works much harder to process and break down nutrients during the time that closely follows a meal compared with many hours after a meal. As these cellular demands and conditions vary, so do the amounts and...
9.9K
Introduction to Metabolism
452
Metabolism encompasses all biochemical reactions in a living organism, facilitating both the breakdown and synthesis of biomolecules. These metabolic processes are categorized into catabolic and anabolic pathways, which operate in a coordinated manner to ensure energy balance and cellular function.Catabolic Pathways and Energy ReleaseCatabolic pathways involve the breakdown of complex macromolecules such as carbohydrates, lipids, and proteins into smaller structures like monosaccharides, fatty...
452
Operon Model
127
The operon model represents a fundamental mechanism of gene regulation in prokaryotes, enabling coordinated expression of genes involved in related metabolic or functional pathways. Operons consist of structural genes, a promoter, and an operator, with transcription regulated by repressors, activators, and small effector molecules.Structure and Function of OperonsAn operon is a cluster of structural genes transcribed together under the control of a single promoter. The promoter region...
127
Overview of Metabolism
32.2K
Living cells constantly carry out various chemical reactions which are necessary for their proper functioning. These reactions are interlinked to one another via multiple pathways. The collection of these chemical reactions is known as metabolism.
Plant Metabolism
Sunlight, the primary source of energy in plants, is first absorbed by the chlorophyll pigments present in their leaves. Plants then use this energy to carry out photosynthesis, where water is oxidized into oxygen and carbon dioxide...
Plant Metabolism
Sunlight, the primary source of energy in plants, is first absorbed by the chlorophyll pigments present in their leaves. Plants then use this energy to carry out photosynthesis, where water is oxidized into oxygen and carbon dioxide...
32.2K
Pharmacokinetic Models: Comparison and Selection Criterion
153
Physiological and compartmental models are valuable tools used in studying biological systems. These models rely on differential equations to maintain mass balance within the system, ensuring an accurate representation of the dynamic processes at play.
Physiological models take a detailed approach by considering specific molecular processes. They can predict drug distribution, metabolism, and elimination changes, providing a comprehensive understanding of how drugs interact with the body.
Physiological models take a detailed approach by considering specific molecular processes. They can predict drug distribution, metabolism, and elimination changes, providing a comprehensive understanding of how drugs interact with the body.
153
What is Metabolism?
117.9K
Overview
117.9K


