相关实验视频
Updated: Sep 18, 2025

11:03
Massively Parallel Reporter Assays in Cultured Mammalian Cells
Published on: August 17, 2014
21.8K
血统特定的监管演变:来自大规模并行记者分析的见解
Ryder Easterlin1, Nadav Ahituv1
1Department of Bioengineering and Therapeutic Sciences, University of California San Francisco, San Francisco, CA, USA; Institute for Human Genetics, University of California San Francisco, San Francisco, CA, USA.
Current opinion in genetics & development
|June 21, 2025
概括
大规模并行记者测定 (MPRA) 揭示了调控元素中的遗传变异如何推动进化变化. 这项技术有助于通过研究物种间的基因表达差异来理解人类进化.
科学领域:
- 进化基因组学是进化的基因组学.
- 监管要素的功能是监管元素的功能.
- 人类进化人类的进化.
背景情况:
- 特定于血统的遗传变异对于进化分歧至关重要.
- 调节基因表达的基因调节元素,影响进化轨迹.
- 了解调节元素的演变是区分人类特征的关键.
研究的目的:
- 审查大规模并行报告测试 (MPRA) 在研究血统特定监管活动中的应用.
- 突出MPRAs在分析不同人类和灵长类动物血统中的增强元件方面的作用.
- 讨论MPRA技术如何有助于理解基因表达分歧.
主要方法:
- 使用大规模并行报告测试 (MPRA) 来在规模上表征遗传变异.
- 分析增强元件的监管活动,包括人类加速区域和保存删除.
- 使用MPRA数据解开对基因表达的cis-和trans-regulatory贡献.
主要成果:
- 在关键的进化区域中,MPRAs已经成功地确定了特定于血统的监管活动.
- 通过MPRA研究的增强器变异影响了区分现代人类,古人类和灵长类动物的特征.
- MPRAs有效地区分基因表达分歧的 cis 和跨调节效应.
结论:
- MPRAs是研究基因调节演变的强大工具.
- 未来与CRISPR和AI的整合将进一步提高我们对监管演变的理解.
- 这种方法为人类特有的特征和进化的遗传基础提供了关键的见解.
相关概念视频
Cis-regulatory Sequences
10.2K
Cis-regulatory sequences are short fragments of non-coding DNA that are present on the same chromosomes as the genes that they regulate. These fragments serve as binding sites for transcriptional regulators, proteins that are responsible for controlling gene transcription and differential gene expression across cell types in eukaryotes. Cis-regulatory sequences can be close to the gene of interest or thousands of bases away in the DNA sequence; however, those sequences that are further away are...
10.2K
Gene Evolution - Fast or Slow?
7.5K
The genomes of eukaryotes are punctuated by long stretches of sequence which do not code for proteins or RNAs. Although some of these regions do contain crucial regulatory sequences, the vast majority of this DNA serves no known function. Typically, these regions of the genome are the ones in which the fastest change, in evolutionary terms, is observed, because there is typically little to no selection pressure acting on these regions to preserve their sequences.
In contrast, regions which code...
In contrast, regions which code...
7.5K
Regulation of Expression at Multiple Steps
1.0K
The gene expression in cells is regulated at different stages: (i) transcription, (ii) RNA processing, (iii) RNA localization, and (iv) translation. Transcriptional regulation is mediated by regulatory proteins such as transcription factors, activators, or repressors—these control gene expression by initiating or inhibiting the transcription of genes. Once a precursor or pre-mRNA is produced, it undergoes post-transcriptional modification, including 5' capping, splicing, and the...
1.0K
Reporter Genes
11.9K
Reporter genes are a type of protein-coding gene that are often tagged to a gene of interest. Once inside a target cell, reporter genes usually produce visually identifiable characteristics like fluorescence and luminescence when expressed along with the gene of interest. Thus, reporter genes “report” the presence or absence of genes of interest in an organism, determine the gene expression pattern, or track the physical location of a DNA segment or protein in the cell.
11.9K
Regulation of Expression Occurs at Multiple Steps
23.5K
Gene expression can be regulated at almost every step from gene to protein. Transcription is the step that is most commonly regulated. This involves the binding of proteins to short regulatory sequences on the DNA. This association can either promote or inhibit the transcription of a gene associated with the respective sequence.
Transcription results in the generation of precursor (pre-mRNA) that consists of both exons and introns, which needs further processing before being translated to a...
Transcription results in the generation of precursor (pre-mRNA) that consists of both exons and introns, which needs further processing before being translated to a...
23.5K
Gene Duplication and Divergence
6.4K
The seminal work of Ohno in 1970 popularized the idea of gene duplication and divergence. DNA sequence comparison studies reveal that a large portion of the genes in bacteria, archaebacteria, and eukaryotes was generated by gene duplication and divergence, indicating its critical role in evolution.
The duplicated copies of the gene are called Paralogs. Paralogs with similar sequences and functions form a gene family. Across several species, a large number of gene families are...
The duplicated copies of the gene are called Paralogs. Paralogs with similar sequences and functions form a gene family. Across several species, a large number of gene families are...
6.4K

