EzSEA:一种用于酶序列演变分析的交互式网络接口
Angela K Jiang1,2, Jerry Zhao2, Xiaofang Jiang2
1Center of Bioinformatics and Computational Biology, University of Maryland, College Park, MD 20740, United States.
Bioinformatics advances
|June 23, 2025
概括
酶序列进化分析 (EzSEA) 确定了塑造酶功能和进化的关键突变. 这个网络工具将进化史与直观的可视化集成在一起,以更好地理解酶进化.
科学领域:
- 生物化学 生物化学
- 进化生物学 进化生物学
- 生物信息学是一种生物信息学.
背景情况:
- 酶对生物过程至关重要,理解它们的进化需要识别功能突变.
- 分析酶进化的现有方法缺乏集成的进化史和可视化工具.
研究的目的:
- 开发酶序进化分析 (EzSEA),一种用于识别酶中的功能重要突变的网络接口.
- 提供进化见解的直观可视化,突出重点突变和遗传学关系.
主要方法:
- EzSEA集成了结构预测,同质性搜索,多个序列对齐,遗传树推断和祖先序列重建.
- 该工具可以划分酶和可视化基因树上的关键突变.
主要成果:
- 通过分析酶序列演变,EzSEA成功地识别了功能性重要突变.
- 该工具通过精确定位肠道细菌酶胆红素减少酶中已知的关键突变来验证.
结论:
- EzSEA提供了一种新的,综合的方法来研究酶进化.
- 网页界面为研究人员提供了有价值的工具,以探索酶功能和进化轨迹.
相关概念视频
Evolutionary Relationships through Genome Comparisons
6.2K
Genome comparison is one of the excellent ways to interpret the evolutionary relationships between organisms. The basic principle of genome comparison is that if two species share a common feature, it is likely encoded by the DNA sequence conserved between both species. The advent of genome sequencing technologies in the late 20th century enabled scientists to understand the concept of conservation of domains between species and helped them to deduce evolutionary relationships across diverse...
6.2K
Enzyme-linked Receptors
80.1K
Enzyme-linked receptors are proteins that act as both receptor and enzyme, activating multiple intracellular signals. This is a large group of receptors that include the receptor tyrosine kinase (RTK) family. Many growth factors and hormones bind to and activate the RTKs.
Neurotrophin (NT) receptors are a family of RTKs, including trkA, trkB, and trkC (tropomyosin-related kinase) receptors. TrkA is specific for nerve growth factor (NGF), neurotrophin-6, and neurotrophin-7. TrkB binds...
Neurotrophin (NT) receptors are a family of RTKs, including trkA, trkB, and trkC (tropomyosin-related kinase) receptors. TrkA is specific for nerve growth factor (NGF), neurotrophin-6, and neurotrophin-7. TrkB binds...
80.1K
Enzyme Kinetics
99.0K
Enzymes speed up reactions by lowering the activation energy of the reactants. The speed at which the enzyme turns reactants into products is called the rate of reaction. Several factors impact the rate of reaction, including the number of available reactants. Enzyme kinetics is the study of how an enzyme changes the rate of a reaction.
Scientists typically study enzyme kinetics with a fixed amount of enzyme in the controlled environment of a test tube. When more reactant, or substrate, is...
Scientists typically study enzyme kinetics with a fixed amount of enzyme in the controlled environment of a test tube. When more reactant, or substrate, is...
99.0K
Introduction to Enzymes
20.1K
The use of enzymes by humans dates to 7000 BCE. Humans first used enzymes to ferment sugars and produce alcohol without knowing that this was an enzyme-catalyzed reaction. Wilhelm Kuhne coined the term 'enzyme' in 1877 from the Greek words ‘en’ meaning ‘in’ or ‘within’ and ‘zyme’ meaning ‘yeast.’
Most enzymes are proteins that speed up biochemical reactions without being consumed. Enzymes contain one or more active sites that...
Most enzymes are proteins that speed up biochemical reactions without being consumed. Enzymes contain one or more active sites that...
20.1K
Protein-protein Interfaces
13.7K
Many proteins form complexes to carry out their functions, making protein-protein interactions (PPIs) essential for an organism's survival. Most PPIs are stabilized by numerous weak noncovalent chemical forces. The physical shape of the interfaces determines the way two proteins interact. Many globular proteins have closely-matching shapes on their surfaces, which form a large number of weak bonds. Additionally, many PPIs occur between two helices or between a surface cleft and a...
13.7K
Enzyme-Linked Immunosorbent Assay
14.2K
In 1971, Peter Perlman and Eva Engvall developed an Enzyme-linked immunosorbent assay (ELISA or EIA). ELISA differs from western blot in that the assays are conducted in microtiter plates or in vivo rather than on an absorbent membrane.
There are many different types of ELISAs, but they all involve an antibody molecule whose constant region binds an enzyme, leaving the variable region free to bind its specific antigen. Enzyme-substrate reaction allows the antigen to be visualized or...
There are many different types of ELISAs, but they all involve an antibody molecule whose constant region binds an enzyme, leaving the variable region free to bind its specific antigen. Enzyme-substrate reaction allows the antigen to be visualized or...
14.2K


