相关实验视频
Updated: Jul 27, 2026

09:09
A Method for Targeted 16S Sequencing of Human Milk Samples
Published on: March 23, 2018
基于peptidomics技术和深度学习方法的DeepMAMP在人乳中发现了牛奶衍生的抗微生物
Wenhao Yu1, Xinchen Zhang2, Yang Yu1
1Division of Energy Research Resources, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian, Liaoning 116023, China.
Food chemistry
|June 25, 2025
概括
发现新型人乳抗菌 (HMAMPs) 对婴儿健康至关重要. 一个新的深度学习模型,DeepMAMP,准确地预测HMAMP,帮助它们在食品和医药中的应用.
科学领域:
- 生物化学 生物化学
- 免疫学 免疫学 免疫学
- 计算生物学 计算生物学
背景情况:
- 乳制品抗微生物 (MAMPs),特别是人乳抗微生物 (HMAMPs),对于婴儿营养和免疫发育至关重要.
- 现有的预测模型对HMAMP缺乏准确性,需要先进的高通量方法.
研究的目的:
- 开发一种新的工作流程,使用基学和深度学习来发现HMAMPs.
- 引入DeepMAMP,这是一个新的预测模型,用于高精度识别HMAMP.
主要方法:
- 采用基技术进行样本分析.
- 开发了DeepMAMP模型,集成光梯度增强机 (LightGBM),长短期记忆 (LSTM) 和注意力机制.
- 使用DeepMAMP模型预测了311个潜在的HMAMP.
主要成果:
- 在预测HMAMP时,DeepMAMP模型实现了81.4%的准确性.
- 实验验证证了六个预测的HMAMP中的五个是功能性的.
- 证明了HMAMP查的拟议工作流程和模型的有效性.
结论:
- DeepMAMP模型为发现新型HMAMP提供了强大而准确的工具.
- 综合体学和深度学习方法为HMAMP查提供了一个全面的策略.
- 这些发现支持HMAMP在功能性食品和药品中的潜在应用.
相关概念视频
MALDI-TOF Mass Spectrometry
Mass spectrometry is a powerful characterization technique that can identify and separate a wide variety of compounds ranging from chemical to biological entities, based on their mass-to-charge ratio (m/z). The instruments that allow this detection, known as mass spectrometers, have three components: an ion source, a mass analyzer, and a detector. These spectrometers differ based on the nature of their ion source and analyzers.Matrix-assisted laser desorption ionization (MALDI) is a commonly...
Peptide Identification Using Tandem Mass Spectrometry
Tandem mass spectrometry, also known as MS/MS or MS2, is an analytical technique that employs two mass analyzers. Essentially it is a series of mass spectrometers that helps isolate a particular biomolecule and then helps study its chemical properties.
This technique helps gather information regarding the protein from which the peptide was obtained and to study the peptides’ amino acid sequence. Identifying peptides from a complex mixture is an important component of the growing field of...
This technique helps gather information regarding the protein from which the peptide was obtained and to study the peptides’ amino acid sequence. Identifying peptides from a complex mixture is an important component of the growing field of...
Microorganisms in Medicine and Therapeutics
Microorganisms play a fundamental role in vaccine development, gene therapy, and therapeutic production. Their biological properties are harnessed to advance medicine and public health. Beyond immunization, microorganisms contribute to gut health, antibiotic synthesis, and genetic disease treatment.Live Attenuated and Inactivated VaccinesLive attenuated vaccines, such as the measles, mumps, and rubella (MMR) vaccine, utilize weakened forms of pathogens to closely resemble natural infections.
Development of Human Microbiota
The human microbiota begins developing at birth and undergoes continual change as we age. Infancy marks a critical period of microbial sensitivity, offering a “window of opportunity” during which beneficial microbes help mature the immune system. By age three, children typically develop a more stable and diverse microbial community. Newborns acquire microbes from their immediate environment; vaginal delivery favors maternal vaginal microbes, while cesarean births favor microbes from the skin...
Rapid Identification of Pathogens
MALDI-TOF MS has transformed clinical microbiology by offering a rapid and reliable method for pathogen identification. The traditional approach to microbial identification typically involves time-consuming culture techniques and biochemical tests, which can delay the initiation of appropriate antimicrobial therapy. MALDI-TOF MS avoids these delays by using characteristic ribosomal protein mass patterns of microbial cells, enabling accurate species-level identification within minutes.Principle...
Clinical Significance of Antibiotic Resistance
Methicillin-resistant Staphylococcus aureus (MRSA) presents a critical public health threat, arising from its capacity to resist β-lactam antibiotics due to acquisition of the mecA gene within the staphylococcal cassette chromosome mec (SCCmec). This gene encodes penicillin-binding protein 2a (PBP2a), which impairs binding efficacy of methicillin and other β-lactams. MRSA has evolved into distinct clonal lineages impacting humans and animals alike, reinforcing its significance within the One...

