对自然结构和化学测绘数据的分析揭示了RNA中的局部稳定性补偿
Robert L Cornwell-Arquitt1, Riley Nigh2, Michael T Hathaway1,3
1Department of Biochemistry and Biophysics, Oregon State University, Corvallis, OR 97333, United States.
Nucleic acids research
|June 26, 2025
概括
RNA折叠由局部稳定性补偿 (LSC) 控制,平衡循环和茎,而不仅仅是全球能量. 这个原理有助于理解RNA功能和设计新的RNA结构.
科学领域:
- 分子生物学分子生物学
- 生物化学 生物化学
- 结构生物学 结构生物学
背景情况:
- RNA分子具有复杂的结构,对生物功能至关重要.
- 目前的RNA设计受限于对折叠原理的不完全理解.
- 全球能源指标往往与自然RNA结构和设计规则相冲突.
研究的目的:
- 引入局部稳定性补偿 (LSC) 作为一个关键的RNA折叠原理.
- 在RNA折叠中挑战全球能量优化的范式.
- 探索LSC在RNA结构和功能中的作用.
主要方法:
- 分析了超过10万个RNA结构以识别LSC签名.
- 在RNA家族的突起和相邻茎中研究了LSC模式.
- 在数千种RNA变体上使用DMS化学映射实验验验证的LSC.
主要成果:
- 在凸起和相邻的茎中,LSC签名突出,根据RNA家族而有所不同.
- 实验数据显示,茎折叠与LSC相关 (R2 = 0.458用于头环).
- 远端干的不稳定性不会显著影响RNA折叠.
结论:
- RNA折叠是由循环和茎 (LSC) 之间的局部平衡控制的.
- LSC为了解RNA功能提供了一个指导原则.
- LSC促进了新型RNA分子的合理设计.
相关概念视频
RNA Stability
33.9K
Intact DNA strands can be found in fossils, while scientists sometimes struggle to keep RNA intact under laboratory conditions. The structural variations between RNA and DNA underlie the differences in their stability and longevity. Because DNA is double-stranded, it is inherently more stable. The single-stranded structure of RNA is less stable but also more flexible and can form weak internal bonds. Additionally, most RNAs in the cell are relatively short, while DNA can be up to 250 million...
33.9K
Nucleic Acid Structure
7.2K
The pentose sugar in DNA is deoxyribose, while in RNA the pentose sugar is ribose. The difference between the sugars is the presence of the hydroxyl group on the ribose's second carbon and a hydrogen on the deoxyribose's second carbon. The phosphate residue attaches to the hydroxyl group of the 5′ carbon of one sugar and the hydroxyl group of the 3′ carbon of the sugar of the next nucleotide, which forms a 5′ to 3′ phosphodiester linkage.
DNA Structure
DNA...
DNA Structure
DNA...
7.2K
RNA Structure
5.3K
The basic structure of RNA consists of a string of ribonucleotides attached by phosphodiester bonds. Although most RNA is single-stranded, it can form complex secondary and tertiary structures. Such structures play essential roles in the regulation of transcription and translation.
Different Types of RNA Have the Same Basic Structure
There are three main types of ribonucleic acid (RNA) involved in protein synthesis: messenger RNA (mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA). All three...
Different Types of RNA Have the Same Basic Structure
There are three main types of ribonucleic acid (RNA) involved in protein synthesis: messenger RNA (mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA). All three...
5.3K
Nucleic acids
170.2K
Nucleic acids are the most important macromolecules for the continuity of life. They carry the cell's genetic blueprint and carry instructions for its functioning.
DNA and RNA
The two main types of nucleic acids are deoxyribonucleic acid (DNA) and ribonucleic acid (RNA). DNA is the genetic material in all living organisms, ranging from single-celled bacteria to multicellular mammals. It is in the nucleus of eukaryotes and in the organelles, chloroplasts, and mitochondria. In prokaryotes,...
DNA and RNA
The two main types of nucleic acids are deoxyribonucleic acid (DNA) and ribonucleic acid (RNA). DNA is the genetic material in all living organisms, ranging from single-celled bacteria to multicellular mammals. It is in the nucleus of eukaryotes and in the organelles, chloroplasts, and mitochondria. In prokaryotes,...
170.2K
Types of RNA
6.5K
Three main types of RNA are involved in protein synthesis: messenger RNA (mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA). These RNAs perform diverse functions and can be broadly classified as protein-coding or non-coding RNA. Non-coding RNAs play important roles in regulating gene expression in response to developmental and environmental changes. Non-coding RNAs in prokaryotes can be manipulated to develop more effective antibacterial drugs for human or animal use.
RNA Performs Diverse...
RNA Performs Diverse...
6.5K
Conserved Binding Sites
4.4K
Many proteins’ biological role depends on their interactions with their ligands, small molecules that bind to specific locations on the protein known as ligand-binding sites. Ligand-binding sites are often conserved among homologous proteins as these sites are critical for protein function.
Binding sites are often located in large pockets, and if their location on a protein’s surface is unknown, it can be predicted using various approaches. The energetic method computationally...
Binding sites are often located in large pockets, and if their location on a protein’s surface is unknown, it can be predicted using various approaches. The energetic method computationally...
4.4K


