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在NetLogo3D中模拟基于代理的模型的Web应用程序

Chris Davis Perumal¹, Abraham Nofal², Benedict J Kolber²

¹Department of Mathematics and Computer Science, Duquesne University, Pittsburgh, PA.

Spora : a journal of biomathematics

|June 27, 2025

概括

研究人员开发了一个基于代理的模型 (ABM) 的网络应用程序,使复杂的模拟可以在没有编程知识的情况下使用. 这种工具增强了与疼痛相关的神经活动的研究,并扩大了科学可访问性.

科学领域:

计算神经科学是一种计算神经科学.
系统生物学系统生物学
科学计算是科学计算.

背景情况:

基于代理的模型 (ABM) 是强大的模拟工具,但通常需要专门的软件 (例如,NetLogo) 和编程专业知识,限制了其在计算领域以外的研究人员的可访问性.
现有的ABM平台可能会给缺乏编程经验的科学家带来重大进入障碍,阻碍跨学科研究和公众参与.
复杂的生物系统的模拟,如神经活动,受益于可访问的建模工具,以促进更广泛的科学参与.

研究的目的:

开发一个用户友好的网络应用程序来模拟基于代理的模型 (ABM),而不需要专门的软件或编程技能.
提高特定的ABM的可访问性,模拟杏仁体中枢核中与疼痛相关的神经活动.
展示一种可转移的方法,使各种ABM更容易获得更广泛的受众.

主要方法:

开发了一个Web应用程序界面,与最初在NetLogo3D中创建的基于代理的模型 (ABM) 进行交互.
网络应用程序允许用户修改模拟参数,执行模型,并在Web浏览器中直接可视化新出现的输出.
用户不需要专门的软件安装或编码知识才能运行模拟.

主要成果:

成功创建了一个基于网络的平台,使用户能够运行和与模拟与疼痛相关的神经活动的ABM进行交互.
用户可以修改模型参数,运行模拟,可视化疼痛输出,并通过直观的浏览器界面导出数据.
该应用程序有效地消除了技术障碍,为研究人员和公众扩大了对ABM的访问.

结论:

网络应用程序提供了一个可行的解决方案,以提高基于代理的模型 (ABM) 的可访问性,用于科学研究和教育.
这种方法使复杂的计算模型的使用民主化,促进更广泛的采用和跨学科的合作.
开发的平台增强了特定ABM的覆盖范围,并为使其他基于代理的模拟更加用户友好提供了一个模板.

关键词:

在NetLogo中,使用的是NetLogo.可访问性可访问性基于代理的模型基于代理的模型神经科学神经科学模拟模拟是指一个模拟模拟.

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