EPSD 2.0:一个更新的数据库蛋白质酸化网站跨真核生物物种
Miaomiao Chen1, Yujie Gou1, Ming Lei1
1Department of Bioinformatics and Systems Biology, Key Laboratory of Molecular Biophysics of the Ministry of Education, Hubei Bioinformatics and Molecular Imaging Key Laboratory, College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan 430074, China.
Genomics, proteomics & bioinformatics
|June 28, 2025
概括
更新后的真核酸化站点数据库2.0 (EPSD 2.0) 现在包含超过270万个酸化站点,为研究真核生物中的蛋白质酸化提供了全面的资源.
科学领域:
- 分子生物学分子生物学
- 生物化学 生物化学
- 生物信息学是一种生物信息学.
背景情况:
- 蛋白质酸化是一种关键的翻译后修饰,调节各种真核生物的生物过程.
- 精确的生物保养和酸化数据的整合对于推动生物研究至关重要.
研究的目的:
- 为了呈现更新的真核酸化站点数据库2.0 (EPSD 2.0).
- 为了提供一个全面的,精心策划的资源实验识别的酸化位和蛋白在真核生物.
主要方法:
- 从高通量蛋白组学研究中收集和整合了新的酸化点.
- 与以前版本 (EPSD 1.0) 和10个公共数据库的数据合并.
- 手动策划和注释功能事件,下游效应和对酸化地点的监管影响.
主要成果:
- EPSD 2.0包括2,769,163个在223个真核生物中的362,707个蛋白中经过实验识别的化位 (p位).
- 对32,762个p位进行了注释的88,074个功能事件,详细介绍了对蛋白和生物过程的影响.
- 整合了来自15个不同生物领域的100个外部平台的广泛注释.
结论:
- EPSD 2.0 作为一种有价值的,免费可访问的在线资源,用于真核生物酸化研究.
- 该数据库促进了对蛋白质酸化的作用和调节的全面研究.
- 增强的注释支持对蛋白功能和通路的深入分析.
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