蛋白质组重新分配的最小化解释了碳来源的层次利用中的代谢过渡
Zhihao Liu1,2, Minghao Chen1, Jingmin Hu1
1State Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, Shanghai, China.
mSystems
|June 30, 2025
概括
细菌在面对环境变化时,通过尽量减少蛋白质组重新分配来调整新陈代谢. 这个原理解释了Bacillus coagulans中的代谢转变,通过动态最小化蛋白质重新分配 (dMORP) 模拟来验证.
科学领域:
- 微生物的新陈代谢
- 系统生物学 系统生物学
- 酶动力学 酶动力学
背景情况:
- 代谢网络允许细胞适应各种环境,但决策原则尚不清楚,特别是在动态条件下.
- 凝血菌表现出不同的发酵途径 (同乳和异乳),取决于碳源的可用性.
研究的目的:
- 在不断变化的环境条件下研究细菌中代谢途径选择的原则.
- 为了建模和验证在混合碳源利用过程中观察到的Bacillus coagulans中的代谢过渡.
主要方法:
- 利用一种受酶约束的基因组规模代谢模型.
- 应用了蛋白质组重新分配 (dMORP) 计算框架的动态最小化.
- 进行了细菌菌株的实验进化,并使用omics数据进行了验证.
主要成果:
- 在转换从单一到混合碳来源 (葡萄糖和三糖) 时,观察到Bacillus coagulans从同乳酸到异乳酸发酵的代谢过渡.
- dMORP模拟准确地预测了这种代谢转变,并且与实验性奥米克数据一致.
- 进化的菌株表明混合碳来源的共同利用和抑制的异乳酸发酵,进一步支持dMORP模型.
结论:
- 细菌在适应环境变化时倾向于最大限度地减少蛋白质组重新分配,相应地调整新陈代谢.
- 该dMORP框架提供了一个有价值的工具,用于模拟和理解细胞代谢动态,以应对环境干扰.
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