在斑马鱼早期发育过程中对mRNA 3'末端的全面分析揭示了全基因组范围的3'UTR变化的动态
Ludivine Fierro1, Anna Ishii1, Haruka Aoyama1
1Biosystems Science Course, Graduate School of Life Science, Hokkaido University, Sapporo, Japan.
FEBS letters
|July 2, 2025
概括
胚胎动态改变信使RNA (mRNA) 3'未翻译区域 (UTRs),这一过程对于调节早期发育过程中蛋白质合成至关重要. 这项研究揭示了控制生物过程的全基因组3'-end动态.
科学领域:
- 分子生物学分子生物学
- 发展生物学 发展生物学
- 基因组学就是基因组学.
背景情况:
- 蛋含有超过10,000个消息传递 RNA (mRNA),在早期发育过程中对蛋白质合成至关重要.
- 对于胚胎发育来说,mRNA转化状态的变化至关重要,但调节机制尚未完全理解.
研究的目的:
- 在早期斑马鱼胚胎发生过程中,调查mRNA 3'未翻译区域 (UTR) 的全基因组变化.
- 了解3' UTRs的动态调节及其与蛋白质合成的联系.
主要方法:
- 利用3'端RNA测序来分析斑马鱼胚胎中的mRNA3'端.
- 采用计算方法来识别和量化3' UTRs的变化.
- 与蛋白质合成水平相关的3' UTR动态.
主要成果:
- 成千上万的mRNA在早期发育过程中表现出3' UTR缩短,这与之前对pou5f3 mRNA的发现一致.
- 大多数胚胎mRNA被发现具有多个3'端,其比例有动态变化.
- 这些观察到的3' UTRs的变化与蛋白质合成的变化直接相关.
结论:
- 这项研究揭示了胚胎发育期间mRNA调节的广泛的全基因组3'-end动态.
- 3' UTRs中的这些动态变化在编排生物过程中发挥着重要作用.
- 这些发现为早期发育中的转录后基因调节提供了新的见解.
相关概念视频
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In eukaryotic cells, transcripts made by RNA polymerase are modified and processed before exiting the nucleus. Unprocessed RNA is called precursor mRNA or pre-mRNA to distinguish it from mature mRNA.
Once about 20-40 ribonucleotides have been joined together by RNA polymerase, a group of enzymes adds a “cap” to the 5’ end of the growing transcript. In this process, a 5’ phosphate is replaced by modified guanosine that has a methyl group attached to it (7-Methyl guanosine). This 5’ cap helps the...
Once about 20-40 ribonucleotides have been joined together by RNA polymerase, a group of enzymes adds a “cap” to the 5’ end of the growing transcript. In this process, a 5’ phosphate is replaced by modified guanosine that has a methyl group attached to it (7-Methyl guanosine). This 5’ cap helps the...
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The structure and stability of mRNA molecules regulates gene expression, as mRNAs are a key step in the pathway from gene to protein. In eukaryotes, the half-life of mRNA varies from a few minutes up to several days. mRNA stability is essential in growth and development. The absence of the proteins regulating its stability, such as tristetraprolin in mice, can cause systemic issues, including bone marrow overgrowth, inflammation, and autoimmunity.
Cis-acting Elements involved in mRNA stability
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Ribosome Profiling
Ribosome profiling or ribo-sequencing is a deep sequencing technique that produces a snapshot of active translation in a cell. It selectively sequences the mRNAs protected by ribosomes to get an insight into a cell’s translation landscape at any given point in time.
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Ribosome profiling has many applications, including in vivo monitoring of translation inside a particular organ or tissue type and quantifying new protein synthesis levels.
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Applications of ribosome profiling
Ribosome profiling has many applications, including in vivo monitoring of translation inside a particular organ or tissue type and quantifying new protein synthesis levels.
The technique helps...
Pre-mRNA Processing: Modification of pre-mRNA Ends
In eukaryotic cells, transcripts made by RNA polymerase are modified and processed before exiting the nucleus. Unprocessed RNA is called precursor mRNA or pre-mRNA to distinguish it from mature mRNA.
Once about 20-40 ribonucleotides have been joined together by RNA polymerase, a group of enzymes adds a cap to the 5' end of the growing transcript. In this process, a 5' phosphate is replaced by modified guanosine that has a methyl group attached (7-methyl guanosine). This 5' cap helps the cell...
Once about 20-40 ribonucleotides have been joined together by RNA polymerase, a group of enzymes adds a cap to the 5' end of the growing transcript. In this process, a 5' phosphate is replaced by modified guanosine that has a methyl group attached (7-methyl guanosine). This 5' cap helps the cell...


