DMSO对DNA形状和机制的影响
Koen R Storm1, Caroline Körösy2, Enrico Skoruppa3
1Soft Condensed Matter and Biophysics, Department of Physics and Debye Institute for Nanomaterials Science, Utrecht University, Utrecht, the Netherlands; Institute for Physics, University of Augsburg, Universitätsstrasse 1, Augsburg, Germany.
Biophysical journal
|July 3, 2025
概括
在低度 (≤20%) 时,二甲基硫氧化物 (DMSO) 对DNA结构和机制产生轻微影响. 较高的DMSO度会逐渐改变DNA.
科学领域:
- 生物物理学的生物物理.
- 分子生物学分子生物学
- 聚合物科学 聚合物科学
背景情况:
- 甲基二硫氧化物 (DMSO) 是生物分析中常见的溶剂.
- 它对低于化温度的DNA结构和机制的影响尚不清楚.
- 在许多DNA处理试验中,低度的DMSO存在.
研究的目的:
- 研究不同度的DMSO对DNA形状和机械性能的影响.
- 为了解DMSO在生物物理和生物化学测定中的影响建立一个基线.
- 将实验发现与计算模型相关联.
主要方法:
- 单分子技术包括磁和AFM成像.
- 使用磁子进行力延伸和扭曲测量.
- 粗粒的蒙特卡洛模拟DNA作为一个半柔性聚合物.
主要成果:
- DMSO适度降低DNA曲持久度长度线性高达20%的DMSO.
- 化扭矩降低,螺旋扭矩保持稳定,最高可达20%的DMSO.
- AFM成像显示DNA紧缩和端到端距离的减少随着DMSO的增加.
结论:
- 高达50%的DMSO度对DNA有逐渐的影响.
- 低DMSO度 (≤20%) 诱导DNA结构和机制的相对较小的变化.
- 该研究提供了解释使用DMSO测试结果的基本数据.
相关概念视频
DNA Topoisomerases
32.2K
Topoisomerases are enzymes that relax overwound DNA molecules during various cell processes, including DNA replication and transcription. These enzymes regulate positive and negative DNA supercoiling without changing the nucleotide sequence. DNA overwinding in a clockwise direction results in positively supercoiled DNA, whereas underwinding in a counterclockwise direction produces negatively supercoiled DNA.
Types and Mechanism of action
Topoisomerases are divided into two main types. ...
Types and Mechanism of action
Topoisomerases are divided into two main types. ...
32.2K
Fixing Double-strand Breaks
12.9K
The double-stranded structure of DNA has two major advantages. First, it serves as a safe repository of genetic information where one strand serves as the back-up in case the other strand is damaged. Second, the double-helical structure can be wrapped around proteins called histones to form nucleosomes, which can then be tightly wound to form chromosomes. This way, DNA chains up to 2 inches long can be contained within microscopic structures in a cell. A double-stranded break not only damages...
12.9K
Single-Strand DNA Binding Proteins
15.1K
For successful DNA replication, the unwinding of double-stranded DNA must be accompanied by stabilization and protection of the separated single strands of the DNA. This crucial task is performed by single-strand DNA-binding (SSB) proteins. They bind to the DNA in a sequence-independent manner, which means that the nitrogenous bases of the DNA need not be present in a specific order for binding of SSB proteins to it. The binding of SSB proteins straightens single-stranded DNA (ssDNA) and makes...
15.1K


