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相关概念视频

Generation of Straight or Branched Actin Filaments01:14

Generation of Straight or Branched Actin Filaments

3.0K
The straight or branched structure formation of actin filaments is controlled by nucleating proteins such as the formins and Arp2/3 complex. Formin-mediated assembly results in straight filaments, whereas Arp2/3 protein complex-mediated assembly results in branched actin filaments.
Arp2/3 Complex
Arp2/3 complex is a seven-subunit complex consisting of two proteins similar to actin- Arp2 and Arp3, and five other subunits that help keep Arp2 and Arp3 inactive. When required, the complex is...
3.0K
Formation of Higher-order Actin Filaments01:11

Formation of Higher-order Actin Filaments

3.1K
The polymerization of G-actin monomers into filamentous F-actin is a multi-step process. Once the F-actins are formed, they can bundle together in different arrangements to form higher-order networks and regulate cellular functions. Common examples include the formation of lamellipodia and filopodia at the cell's leading edge by actin reorganization in a migrating cell. The microvilli on the brush border epithelial cells are also formed through the F-actin network.
The high-order actin...
3.1K
Studying the Cytoskeleton01:17

Studying the Cytoskeleton

7.0K
The cytoskeletal architecture can be studied using different microscopic and biochemical techniques. Electron microscopy was instrumental in discovering the cytoskeletal architecture around the 1960s, which allowed obtaining structural information at a high-resolution level. However, the sample preparation procedure often limits this ability in biological samples. Several protocols have been developed over the years to optimize sample preparation. In one of the protocols known as rotary...
7.0K
Assembly of Cytoskeletal Filaments01:18

Assembly of Cytoskeletal Filaments

21.4K
Cytoskeletal filaments are polymeric forms of smaller protein subunits. However, individual cytoskeletal filaments may easily disassemble or associate with other similar filaments to form rigid structures. Microfilaments, made of actin monomers, rely on actin-binding proteins to form bundles and create networks of individual actin filaments. Microtubules rely on microtubule-associated proteins (MAPs) to form sturdy cylindrical structures. However, the proteins involved in forming complex...
21.4K
Actin Filament Depolymerization01:19

Actin Filament Depolymerization

3.2K
Actin filaments (F-actin) are composed of actin subunits. The dissociation of actin monomers can occur from either end of F-actin. The rate of dissociation is faster from the minus-end or the pointed end, where the actin subunits exist with a bound ADP, together known as ADP-actin. The depolymerization of F-actin is aided by proteins, including the actin-depolymerizing factor (ADF) and cofilin family of proteins, gelsolin, and glia maturation factor (GMF).
In F-actin, the ADF/cofilin proteins...
3.2K
Actin Polymerization01:42

Actin Polymerization

7.0K
Actin polymerization occurs through the head-to-tail association of binding sites on monomeric actin or G-actin to form filamentous or F-actin. The polymerization can be divided into three phases ̶  nucleation, elongation, and steady-state phase.
The nucleation phase involves forming a stable nucleus consisting of three actin monomers to form a new actin filament. Actin-binding proteins such as formins and Arp2/3 complex help filament growth post-nucleation. The Formins form straight...
7.0K

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相关实验视频

Updated: Sep 17, 2025

Using Microfluidics and Fluorescence Microscopy to Study the Assembly Dynamics of Single Actin Filaments and Bundles
08:02

Using Microfluidics and Fluorescence Microscopy to Study the Assembly Dynamics of Single Actin Filaments and Bundles

Published on: May 5, 2022

2.8K

在模拟的动氨酸网络断层图像中追踪随机定向的细丝.

Salim Sazzed1, Peter Scheible1, Jing He1

  • 1Department of Computer Science.

Proceedings. IEEE International Conference on Bioinformatics and Biomedicine
|July 4, 2025
PubMed
概括

我们开发了一种动态编程方法,用于在杂的冷电子断层扫描中追踪actin丝. 这种高效的框架准确地识别了导线段,改进了Dictyostelium discoideum的结构分析.

科学领域:

  • 细胞生物学 细胞生物学
  • 生物物理学的生物物理.
  • 结构生物学 结构生物学

背景情况:

  • 在Dictyostelium discoideum filopodia中的动素网络是无序的,这使得在冷电子断层扫描中难以识别丝.
  • 现有的方法往往需要关于导线方向的假设,这限制了它们的适用性.

研究的目的:

  • 开发一个计算效率高的框架,用于追踪任意定向的actin纤维.
  • 为了克服噪音和冷电子断层扫描中的混乱所带来的挑战.

主要方法:

  • 采用了基于动态编程的框架,从种子点开始,沿路径积累密度.
  • 该方法考虑了所有可能的方向,积累密度在45°的笛卡尔轴.
  • 候选丝片段 (CFSs) 被确定,装入,根据方向和距离合并,并扩展以填补空白.

主要成果:

  • 该框架在模拟断层扫描上获得了0.999的高精度得分.
  • 观察到更低的0.462回忆得分,主要是由于虚假阴性结果.
  • 该原型展示了用于追踪actin纤维的概念验证.

结论:

  • 动态编程方法在具有挑战性的断层学数据中有效识别actin导线段.

更多相关视频

Visualizing Actin and Microtubule Coupling Dynamics In Vitro by Total Internal Reflection Fluorescence TIRF Microscopy
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Visualizing Actin and Microtubule Coupling Dynamics In Vitro by Total Internal Reflection Fluorescence TIRF Microscopy

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Tuning the Contractility and Deformation Modes of Active Actin-Based Assemblies In Vitro: From Two-Dimensional Active Networks to Liquid Crystal Drops
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Tuning the Contractility and Deformation Modes of Active Actin-Based Assemblies In Vitro: From Two-Dimensional Active Networks to Liquid Crystal Drops

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相关实验视频

Last Updated: Sep 17, 2025

Using Microfluidics and Fluorescence Microscopy to Study the Assembly Dynamics of Single Actin Filaments and Bundles
08:02

Using Microfluidics and Fluorescence Microscopy to Study the Assembly Dynamics of Single Actin Filaments and Bundles

Published on: May 5, 2022

2.8K
Visualizing Actin and Microtubule Coupling Dynamics In Vitro by Total Internal Reflection Fluorescence TIRF Microscopy
08:44

Visualizing Actin and Microtubule Coupling Dynamics In Vitro by Total Internal Reflection Fluorescence TIRF Microscopy

Published on: July 20, 2022

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Tuning the Contractility and Deformation Modes of Active Actin-Based Assemblies In Vitro: From Two-Dimensional Active Networks to Liquid Crystal Drops
06:48

Tuning the Contractility and Deformation Modes of Active Actin-Based Assemblies In Vitro: From Two-Dimensional Active Networks to Liquid Crystal Drops

Published on: July 11, 2025

488
  • 需要进一步精细化光线合并步骤,以改善回忆和减少虚假阴性.
  • 这种方法有望推动actin网络的结构分析.