Jove
Visualize
联系我们
JoVE
x logofacebook logolinkedin logoyoutube logo
关于 JoVE
概览领导团队博客JoVE 帮助中心
作者
出版流程编辑委员会范围与政策同行评审常见问题投稿
图书馆员
用户评价订阅访问资源图书馆顾问委员会常见问题
研究
JoVE JournalMethods CollectionsJoVE Encyclopedia of Experiments存档
教育
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab Manual教师资源中心教师网站
使用条款与条件
隐私政策
政策

相关概念视频

Nucleic Acid Structure01:25

Nucleic Acid Structure

7.1K
The pentose sugar in DNA is deoxyribose, while in RNA the pentose sugar is ribose. The difference between the sugars is the presence of the hydroxyl group on the ribose's second carbon and a hydrogen on the deoxyribose's second carbon. The phosphate residue attaches to the hydroxyl group of the 5′ carbon of one sugar and the hydroxyl group of the 3′ carbon of the sugar of the next nucleotide, which forms  a 5′ to 3′ phosphodiester linkage.
DNA Structure
DNA...
7.1K
Molecular Models02:00

Molecular Models

40.7K
Physical models representing molecular architectures of chemical compounds play essential roles in understanding chemistry. The use of molecular models makes it easier to visualize the structures and shapes of atoms and molecules.
40.7K
Experimental RNAi02:15

Experimental RNAi

6.3K
RNA interference (RNAi) is a cellular mechanism that inhibits gene expression by suppressing its transcription or activating the RNA degradation process. The mechanism was discovered by Andrew Fire and Craig Mello in 1998 in plants. Today, it is observed in almost all eukaryotes, including protozoa, flies, nematodes, insects, parasites, and mammals. This precise cellular mechanism of gene silencing has been developed into a technique that provides an efficient way to identify and determine the...
6.3K
Bacterial RNA Polymerase00:43

Bacterial RNA Polymerase

30.6K
Unlike eukaryotes, bacteria use a single RNA Polymerase (RNAP) to transcribe all genes. The different subunits of bacterial RNAPhave distinct functions. The multisubunit structure of the bacterial RNAP helps the enzyme to maintain catalytic function, facilitate assembly, interact with DNA and RNA, and self-regulate its activity.
In most genes, the transcription site is a single base present upstream of the coding sequence. Though RNAP is a catalytically efficient enzyme, it does not recognize...
30.6K
RNA Stability01:53

RNA Stability

33.9K
Intact DNA strands can be found in fossils, while scientists sometimes struggle to keep RNA intact under laboratory conditions. The structural variations between RNA and DNA underlie the differences in their stability and longevity. Because DNA is double-stranded, it is inherently more stable. The single-stranded structure of RNA is less stable but also more flexible and can form weak internal bonds. Additionally, most RNAs in the cell are relatively short, while DNA can be up to 250 million...
33.9K
RNA-seq03:21

RNA-seq

10.4K
RNA sequencing, or RNA-Seq, is a high-throughput sequencing technology used to study the transcriptome of a cell. Transcriptomics helps to interpret the functional elements of a genome and identify the molecular constituents of an organism. Additionally, it also helps in understanding the development of an organism and the occurrence of diseases. 
Before the discovery of RNA-seq, microarray-based methods and Sanger sequencing were used for transcriptome analysis. However, while...
10.4K

您也可能阅读

相关文章

通过共同作者、期刊和引用图与本文相关的文章。

排序
Same author

Temperature-dependent ion migration underlies sequence-specific collapse of unstructured RNA.

Biophysical journal·2026
Same author

Connecting multiway enhancer-promoter interactions to changes in gene expression in cancer.

bioRxiv : the preprint server for biology·2026
Same author

Green-Synthesized rGO-CeO<sub>2</sub> Nanocomposites for Enhanced Visible-Light Photodegradation of Eosin Y.

Chemistry, an Asian journal·2026
Same author

Poly(ADP-ribose) (PAR) exhibits ion-dependent structural properties distinct from RNA.

Nucleic acids research·2026
Same author

Small-Molecule Drug Discovery Targeting RNAs: Hope or Hype?

Journal of medicinal chemistry·2026
Same author

Droplet growth, Ostwald's rule, and emergence of order in Fused in Sarcoma.

Proceedings of the National Academy of Sciences of the United States of America·2026
Same journal

Tomogram exploration through template matching and deep learning.

Current opinion in structural biology·2026
Same journal

A comparative review of cryo-electron ptychography: Biological applications and future perspectives.

Current opinion in structural biology·2026
Same journal

Metabolic disruptions through a three-dimensional genomic lens.

Current opinion in structural biology·2026
Same journal

Collective variable design for biomolecular conformational dynamics.

Current opinion in structural biology·2026
Same journal

Polymer scaling in protein crowding: From dilute coils to semidilute meshes.

Current opinion in structural biology·2026
Same journal

Tuning the physicochemical properties of rationally designed protein-based biomolecular condensates.

Current opinion in structural biology·2026
查看所有相关文章

相关实验视频

Updated: Sep 16, 2025

Probing RNA Structure with Dimethyl Sulfate Mutational Profiling with Sequencing In Vitro and in Cells
10:34

Probing RNA Structure with Dimethyl Sulfate Mutational Profiling with Sequencing In Vitro and in Cells

Published on: December 9, 2022

4.5K

对于RNA模拟的最小模型.

D Thirumalai1, Naoto Hori2, Hung T Nguyen3

  • 1Department of Chemistry, The University of Texas at Austin, Austin, TX 78712, USA.

Current opinion in structural biology
|July 5, 2025
PubMed
概括
此摘要是机器生成的。

对于RNA折叠和相互作用至关重要. 粗粒度计算模型有助于预测和等离子如何影响RNA行为,有助于理解复杂的生物过程.

更多相关视频

Practical Aspects of Sample Preparation and Setup of 1H R1&#961; Relaxation Dispersion Experiments of RNA
08:17

Practical Aspects of Sample Preparation and Setup of 1H R1ρ Relaxation Dispersion Experiments of RNA

Published on: July 9, 2021

4.8K
Optical Tweezers to Study RNA-Protein Interactions in Translation Regulation
12:26

Optical Tweezers to Study RNA-Protein Interactions in Translation Regulation

Published on: February 12, 2022

5.2K

相关实验视频

Last Updated: Sep 16, 2025

Probing RNA Structure with Dimethyl Sulfate Mutational Profiling with Sequencing In Vitro and in Cells
10:34

Probing RNA Structure with Dimethyl Sulfate Mutational Profiling with Sequencing In Vitro and in Cells

Published on: December 9, 2022

4.5K
Practical Aspects of Sample Preparation and Setup of 1H R1&#961; Relaxation Dispersion Experiments of RNA
08:17

Practical Aspects of Sample Preparation and Setup of 1H R1ρ Relaxation Dispersion Experiments of RNA

Published on: July 9, 2021

4.8K
Optical Tweezers to Study RNA-Protein Interactions in Translation Regulation
12:26

Optical Tweezers to Study RNA-Protein Interactions in Translation Regulation

Published on: February 12, 2022

5.2K

科学领域:

  • 生物化学和分子生物学
  • 计算生物学 计算生物学
  • 生物物理学的生物物理.

背景情况:

  • RNA在许多生物过程中起着至关重要的作用.
  • 阴离子相互作用对于RNA折叠,RNA-RNA相互作用和相分离至关重要.
  • 单靠实验方法是不够的,不能完全阐明阴离子-RNA相互作用的动态.

研究的目的:

  • 描述用于模拟阴离子-RNA相互作用的粗粒度模型的开发和应用.
  • 用计算方法预测离子如何影响RNA行为.
  • 要突出单价和双价在RNA折叠和相分离中的作用.

主要方法:

  • 在不同分辨率下开发和使用粗粒度模型.
  • 专注于单个和三个交互现场模型.
  • 使用组合的显式和隐式表示来处理静电相互作用.

主要成果:

  • 讨论了模型应用于 ribozyme 和 riboswitch 折叠的应用.
  • 强调了单价和双价在这些过程中的重要作用.
  • 分析了低复杂度RNA序列中的相分离.

结论:

  • 粗粒度模型提供了必要的理论和计算工具,以了解离子驱动的RNA动态.
  • 这些模型适用于各种RNA结构和功能,包括折叠和相位分离.
  • 未来的挑战包括开发RNA-蛋白相互作用模型,以模拟复杂的系统,如核糖体组装.