通过内在动力学解读菌性疾病突变
Berat Kaskaloglu1, Ozge Duman1, Yigit Kutlu1
1Department of Chemical Engineering, Bogazici University, 34342 Istanbul, Turkey; Polymer Research Center, Bogazici University, 34342 Istanbul, Turkey.
Journal of molecular biology
|July 5, 2025
概括
引起疾病的突变通过改变异质调节来破坏蛋白质动力学. 这项研究透露了突变如何通过分析集体信息流影响蛋白质功能,为疾病机制提供了新的见解.
科学领域:
- 计算生物学 计算生物学
- 结构生物学 结构生物学
- 基因组学就是基因组学.
背景情况:
- 体调节对生物过程至关重要,涉及蛋白质构成变化.
- 了解误解突变如何影响蛋白质功能,尤其是间接的影响,是疾病基因组学的一个关键挑战.
研究的目的:
- 为了研究体质误解突变和内在蛋白质动态之间的联系.
- 探索突变在人类疾病中的全性作用.
主要方法:
- 来自ClinVar数据集的190个人类蛋白质中的2549个突变的分析.
- 应用基于高斯网络模型 (GNM) 的转移 (TE) 方法.
- 使用暂时受体潜在粘脂蛋白1 (TRPML1) 通道的案例研究.
主要成果:
- 全球模式的顺序去除揭示了多层次的,因果的全相互作用.
- 观察到功能部位在各种动态环境中反复出现或出现.
- 发现病原性突变与集体信息流中的关键信息来源/沉没点一致.
结论:
- 与疾病相关的突变扰乱了蛋白质动态,影响了全调节.
- 该研究提供了对突变对蛋白质功能影响的机制性见解.
- 该框架为对人类疾病突变影响的全基解释提供了一条途径.
相关概念视频
Cooperative Allosteric Transitions
2.4K
2.4K
Allosteric Proteins-ATCase
5.9K
Binding sites linkages can regulate a protein's function. For example, enzyme activity is often regulated through a feedback mechanism where the end product of the biochemical process serves as an inhibitor.
Aspartate transcarbamoylase (ATCase) is a cytosolic enzyme that catalyzes the condensation of L-aspartate and carbamoyl phosphate to N-carbamoyl-L-aspartate. This reaction is the first step in pyrimidine biosynthesis. UTP and CTP, the end products of the pyrimidine synthesis...
Aspartate transcarbamoylase (ATCase) is a cytosolic enzyme that catalyzes the condensation of L-aspartate and carbamoyl phosphate to N-carbamoyl-L-aspartate. This reaction is the first step in pyrimidine biosynthesis. UTP and CTP, the end products of the pyrimidine synthesis...
5.9K
Allosteric Regulation
59.1K
Allosteric regulation of enzymes occurs when the binding of an effector molecule to a site that is different from the active site causes a change in the enzymatic activity. This alternate site is called an allosteric site, and an enzyme can contain more than one of these sites. Allosteric regulation can either be positive or negative, resulting in an increase or decrease in enzyme activity. Most enzymes that display allosteric regulation are metabolic enzymes involved in the degradation or...
59.1K
Mutations
84.5K
Overview
84.5K
Ligand Binding and Linkage
4.9K
Allosteric proteins have more than one ligand binding site; the binding of a ligand to any of these sites influences the binding of ligands to the other sites. When a protein is allosteric, its binding sites are called coupled or linked. In the case of enzymes, the site that binds to the substrate is known as the active site and the other site is known as the regulatory site. When a ligand binds to the regulatory site, this leads to conformational changes in the protein that can influence...
4.9K
ATP Synthase: Mechanism
15.2K
In animals, the mitochondrial F1F0 ATP synthase is the key protein that synthesizes ATP molecules through a complex catalytic mechanism. While the nuclear genome encodes the majority of ATP synthase subunits, the mitochondrial genome encodes some of the enzyme's most critical components. The formation of this multi-subunit enzyme is a complex multi-step process regulated at the level of transcription, translation, and assembly. Defects in one or more of these steps can result in decreased...
15.2K


