核细胞间距可以微调高阶染色体组合
Lifeng Chen1,2, M Julia Maristany2,3,4, Stephen E Farr3
1Department of Biophysics and Howard Hughes Medical Institute, University of Texas Southwestern Medical Center, Dallas, TX, USA.
Nature communications
|July 8, 2025
概括
核细胞间距通过相位分离来控制染色质组织. 较长的DNA链接器降低了凝结物的稳定性,增加了染色质的移动性,影响了核过程.
科学领域:
- 分子生物学分子生物学
- 生物物理学的生物物理.
- 基因组学就是基因组学.
背景情况:
- 细胞染色质表现出复杂的结构和动态,对核功能至关重要.
- 染色体纤维的相分离是一种调节染色体组织的拟议机制.
- 了解影响染色体相位分离的因素对于阐明基因调节和核结构至关重要.
研究的目的:
- 调查核细胞间距在控制单基对分辨率下染色体相位分离中的作用.
- 确定DNA链接长度的变化如何影响染色质凝聚物的稳定性和动态性.
- 探索核细胞重塑剂对染色体相位分离的影响.
主要方法:
- 生物化学试验用于研究色素结构和相互作用.
- 分子动力学模拟以高分辨率建模染色质的行为.
- 核细胞堆叠 (分子间和分子内) 和凝聚体热力学分析.
主要成果:
- 将DNA链接器从25bp (10N+5) 延长到30bp (10N) 减少了染色质凝聚物的稳定性,并增加了核细胞的移动性.
- 这种调制归因于分子间和分子内核酶体堆叠之间的平衡,受链接器刚性的影响.
- 核酶体重塑器可以通过重新定位核酶体来动态改变相位分离,从而改变堆叠平衡.
结论:
- 染色体的内在相位分离能力允许微调压缩和动态.
- 核细胞间距是染色体组织和核过程的关键决定因素.
- 这些发现为体内异质色素组织背后的机制提供了洞察力.
相关概念视频
Chromatin Packaging
17.4K
Each human somatic cell contains 6 billion base pairs of DNA. Each base pair is 0.34 nm long, meaning each diploid cell contains a staggering 2 meters of DNA. This long DNA strand is packed inside a nucleus measuring only 10-20 microns in diameter with the help of specialized DNA-binding proteins called histones. Together they form a compact DNA-protein complex called chromatin. The chromatin is further compacted into higher-order structures. The highest level of compaction is achieved during...
17.4K
Nucleosome Remodeling
9.5K
Nucleosomes are the basic units of chromatin compaction. Each nucleosome consists of the DNA bound tightly around a histone core, which makes the DNA inaccessible to DNA binding proteins such as DNA polymerase and RNA polymerase. Hence, the fundamental problem is to ensure access to DNA when appropriate, despite the compact and protective chromatin structure.
Nucleosome remodeling complex
Eukaryotic cells have specialized enzymes called ATP-dependent nucleosome remodeling enzymes. These enzymes...
Nucleosome remodeling complex
Eukaryotic cells have specialized enzymes called ATP-dependent nucleosome remodeling enzymes. These enzymes...
9.5K
The Nucleosome
2.5K
Human DNA is almost two meters long. However, it is compressed inside a tiny nucleus measuring only a few microns in diameter. To make this degree of compaction possible, DNA is organized into several sequential levels so that it can fit into such a tiny space. The most compact form of DNA is a chromosome that can be seen under a microscope in a dividing cell.
In a chromosome, DNA is wound twice around a protein complex called a histone octamer core, which consists of 8 histone proteins. This...
In a chromosome, DNA is wound twice around a protein complex called a histone octamer core, which consists of 8 histone proteins. This...
2.5K
The Nucleosome Core Particle
1.3K
Nucleosomes are the DNA-histone complex, where the DNA strand is wound around the histone core. The histone core is an octamer containing two copies of H2A, H2B, H3, and H4 histone proteins.
Nucleosomes, paradoxically, perform two opposite functions simultaneously. On the one hand, their primary aim is to protect the delicate DNA strands from physical damage and help achieve a higher compaction ratio. On the other hand, they must allow polymerase enzymes to access histone-bound DNA during...
Nucleosomes, paradoxically, perform two opposite functions simultaneously. On the one hand, their primary aim is to protect the delicate DNA strands from physical damage and help achieve a higher compaction ratio. On the other hand, they must allow polymerase enzymes to access histone-bound DNA during...
1.3K
Duplication of Chromatin Structure
6.0K
The process of chromosome duplication during cell division requires genome-wide disruption and re-assembly of chromatin. The chromatin structure must be accurately inherited, reassembled, and maintained in the daughter cells to ensure lineage propagation.
The basic unit of the chromatin is the nucleosome, consisting of DNA wrapped around octameric histone proteins and short stretches of linker DNA separating individual nucleosomes. The histone proteins within the nucleosome have their...
The basic unit of the chromatin is the nucleosome, consisting of DNA wrapped around octameric histone proteins and short stretches of linker DNA separating individual nucleosomes. The histone proteins within the nucleosome have their...
6.0K
Chromatin Position Affects Gene Expression
23.7K
Chromatin is the massive complex of DNA and proteins packaged inside the nucleus. The complexity of chromatin folding and how it is packaged inside the nucleus greatly influences access to genetic information. Generally, the nucleus' periphery is considered transcriptionally repressive, while the cell's interior is considered a transcriptionally active area.
Topologically Associated Domains (TADs)
The 3-dimensional positioning of chromatin in the nucleus influences the...
Topologically Associated Domains (TADs)
The 3-dimensional positioning of chromatin in the nucleus influences the...
23.7K


