在标记样本中的脱水中,可交换的周转率和数量
Henock M Deberneh1, Ali Bagherinia1, Rovshan G Sadygov1
1Department of Biochemistry and Molecular Biology, The University of Texas Medical Branch, 301 University of Blvd, Galveston, TX 77555, USA.
International journal of molecular sciences
|July 12, 2025
概括
代谢标签量化了蛋白质的活体循环率. 一种新的计算方法纠正数变化,提高了生物见解的准确性.
科学领域:
- 蛋白质组学和系统生物学
- 生物化学和分子生物学
背景情况:
- 使用脱水和质谱的代谢标记量化了蛋白质的活体周转率.
- 蛋白质周转率是动态的,随生长,环境和饮食而变化,影响生物解释.
- 受可交换数量影响的转化率的变化,降低了统计能力和生物解释能力.
研究的目的:
- 开发一种计算方法,消除蛋白质周转率对可交换气数量的依赖.
- 为了提高蛋白质周转率估计的准确性.
- 为了提高蛋白质组数据的生物解释性.
主要方法:
- 使用液体染色学-质谱学进行高通量蛋白质周转分析.
- 应用生物信息学工具进行数千种蛋白质的数据分析和量化.
- 开发和实施一种新的计算方法来调整交换变量.
主要成果:
- 提出的计算方法成功地消除了周转率对可交换气数量的系统依赖.
- 在估计蛋白质周转率方面获得了更高的准确性.
- 营业额数据的变化减少,从而增加了统计能力.
结论:
- 开发的计算方法显著提高了蛋白质周转率的准确性.
- 这种方法提高了蛋白质组研究的生物解释性.
- 该方法有可能支持对生物动态和疾病机制进行更准确的评估.
更多相关视频
11:32A Hydrogen-Deuterium Exchange Mass Spectrometry HDX-MS Platform for Investigating Peptide Biosynthetic Enzymes
Published on: May 4, 2020
8.2K
08:40Millisecond Hydrogen/Deuterium-Exchange Mass Spectrometry for the Study of Alpha-Synuclein Structural Dynamics Under Physiological Conditions
Published on: June 23, 2022
3.0K
相关概念视频
¹H NMR of Labile Protons: Deuterium (²H) Substitution
974
This lesson illustrates the role of deuterium substitution in simplifying the NMR spectrum of compounds comprising labile protons. One method employed is the use of deuterium. Amongst the three isotopes of hydrogen, deuterium (2H) has a nucleus composed of one proton and one neutron. When the D2O solvent is added to a pure dry ethanol solution, its labile proton is substituted with deuterium.
974
¹H NMR of Labile Protons: Temporal Resolution
1.3K
Protons bonded to heteroatoms such as nitrogen and oxygen exhibit a range of chemical shift values. This is due to the varying degree of hydrogen bonding between the proton and the heteroatom in other molecules. The extent of hydrogen bonding affects the electron density around the proton, thereby giving different chemical shift values for the protons in the proton NMR spectrum.
The –OH proton in alcohols typically appears in the range of δ 2 to 5 ppm but can vary depending on the specific...
The –OH proton in alcohols typically appears in the range of δ 2 to 5 ppm but can vary depending on the specific...
1.3K
Chemical Shift: Internal References and Solvent Effects
776
In an NMR sample, precise measurement of the absolute absorption frequencies of nuclei is difficult. A standard internal reference compound is added, and the frequency difference between the reference signal and sample signals is measured.
The internal reference compound generally used in NMR spectroscopy is tetramethylsilane (TMS). TMS is preferred because it is chemically inert, soluble in NMR solvents, and easily removable. Also, the highly shielded methyl protons in TMS yield an intense...
The internal reference compound generally used in NMR spectroscopy is tetramethylsilane (TMS). TMS is preferred because it is chemically inert, soluble in NMR solvents, and easily removable. Also, the highly shielded methyl protons in TMS yield an intense...
776
