在Euplotes的核糖体框架转移基因中的框架转移位点的进化起源
Ruan-Lin Wang1,2, Xiao-Yan Liu3,4, Qing-Yao Meng3,4
1Key Laboratory of Chemical Biology and Molecular Engineering of Ministry of Education, Institute of Biotechnology, Shanxi University, Taiyuan, 030006, China. rlwang@sxu.edu.cn.
BMC genomics
|July 19, 2025
概括
在Euplotes中常见的编程核糖体框架转移是由积累的内基因突变引起的. 这些突变,特别是在+1和+2框架移位点,受到基因表达水平和蛋白质域位置的约束.
科学领域:
- 分子生物学分子生物学
- 遗传学 遗传学 是一个
- 进化生物学 进化生物学
背景情况:
- 编程核糖体框架转移是一种罕见的翻译重编码事件.
- 在像Euplotes这样的状动物中,用于基因表达,经常需要+1和+2的框架转移.
- 这些位的进化起源在很大程度上仍未被探索.
研究的目的:
- 为了研究Euplotes中的编程核糖体框架移位点的进化起源.
- 分析位和遗传突变之间的关系.
- 了解框架转移站点演变的限制.
主要方法:
- 对Euplotes菌株的转录组和基因组分析进行比较.
- 框架移位点的识别和对齐.
- 分析indel突变模式及其与基因表达和蛋白质域的相关性.
主要成果:
- 在不同Euplotes菌株中确定了147个非保存的移位.
- +1的移位可能来自单核酸插入, +2位来自"TA"插入或单核酸删除.
- 在高度表达的基因中,框架转移部位的频率较低,indel部位与框架转移部位的距离较短,蛋白质域内的氨基酸变化较少.
结论:
- 在Euplotes中广泛的核糖体框架转移可能是由于长期积累的内基因突变造成的.
- 这些内部突变的保存受到特定的进化约束.
- 一个新发现的,只存在于Euplotes woodruffi大核中的框架移位点,表明正在进行的进化.
相关概念视频
Point and Frameshift Mutations
90
Point mutations are genetic alterations involving the change of a single nucleotide base pair in DNA. Depending on how the alteration affects protein synthesis, they can lead to various consequences.Point mutations fall into the following types:Silent mutations occur when a nucleotide change does not alter the amino acid sequence due to the redundancy of the genetic code. For instance, changing ACC to ACA still encodes threonine, leaving the protein function unaffected. This occurs because...
90
Leaky Scanning
5.2K
During most eukaryotic translation processes, the small 40S ribosome subunit scans an mRNA from its 5' end until it encounters the first start AUG codon. The large 60S ribosomal subunit then joins the smaller one to initiate protein synthesis. The location of the translation initiation is largely determined by the nucleotides near the start codon as there may be multiple translation initiation sites present on the mRNA. Marilyn Kozak discovered that the sequence RCCAUGG (where R...
5.2K
Gene Evolution - Fast or Slow?
7.4K
The genomes of eukaryotes are punctuated by long stretches of sequence which do not code for proteins or RNAs. Although some of these regions do contain crucial regulatory sequences, the vast majority of this DNA serves no known function. Typically, these regions of the genome are the ones in which the fastest change, in evolutionary terms, is observed, because there is typically little to no selection pressure acting on these regions to preserve their sequences.
In contrast, regions which code...
In contrast, regions which code...
7.4K
Exon Recombination
3.7K
The evolution of new genes is critical for speciation. Exon recombination, also known as exon shuffling or domain shuffling, is an important means of new gene formation. It is observed across vertebrates, invertebrates, and in some plants such as potatoes and sunflowers. During exon recombination, exons from the same or different genes recombine and produce new exon-intron combinations, which might evolve into new genes.
Exon shuffling follows “splice frame rules.” Each exon...
Exon shuffling follows “splice frame rules.” Each exon...
3.7K
Improving Translational Accuracy
11.9K
Base complementarity between the three base pairs of mRNA codon and the tRNA anticodon is not a failsafe mechanism. Inaccuracies can range from a single mismatch to no correct base pairing at all. The free energy difference between the correct and nearly correct base pairs can be as small as 3 kcal/ mol. With complementarity being the only proofreading step, the estimated error frequency would be one wrong amino acid in every 100 amino acids incorporated. However, error frequencies observed in...
11.9K
Overview of Transposition and Recombination
16.1K
Transposons make up a significant part of genomes of various organisms. Therefore, it is believed that transposition played a major evolutionary role in speciation by changing genome sizes and modifying gene expression patterns. For example, in bacteria, transposition can lead to conferring antibiotic resistance. Movement of transposable elements within the genetic pool of pathogenic bacteria can aid in transfer of antibiotic-resistant genetic elements. In eukaryotes, transposons can carry out...
16.1K


