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相关概念视频

RNA Editing02:23

RNA Editing

9.2K
RNA editing is a post-transcriptional modification where a precursor mRNA (pre-mRNA) nucleotide sequence is changed by base insertion, deletion, or modification. The extent of RNA editing varies from a few hundred bases, in mitochondrial DNA of trypanosomes, to a just single base, in nuclear genes of mammals. Even a single base change in the pre-mRNA can convert a codon for one amino acid into the codon for another amino acid or a stop codon. This type of re-coding can significantly affect the...
9.2K
RNA-seq03:21

RNA-seq

10.4K
RNA sequencing, or RNA-Seq, is a high-throughput sequencing technology used to study the transcriptome of a cell. Transcriptomics helps to interpret the functional elements of a genome and identify the molecular constituents of an organism. Additionally, it also helps in understanding the development of an organism and the occurrence of diseases. 
Before the discovery of RNA-seq, microarray-based methods and Sanger sequencing were used for transcriptome analysis. However, while...
10.4K
RNA Stability01:53

RNA Stability

33.9K
Intact DNA strands can be found in fossils, while scientists sometimes struggle to keep RNA intact under laboratory conditions. The structural variations between RNA and DNA underlie the differences in their stability and longevity. Because DNA is double-stranded, it is inherently more stable. The single-stranded structure of RNA is less stable but also more flexible and can form weak internal bonds. Additionally, most RNAs in the cell are relatively short, while DNA can be up to 250 million...
33.9K
Types of RNA01:20

Types of RNA

6.5K
Three main types of RNA are involved in protein synthesis: messenger RNA (mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA). These RNAs perform diverse functions and can be broadly classified as protein-coding or non-coding RNA. Non-coding RNAs play important roles in regulating gene expression in response to developmental and environmental changes. Non-coding RNAs in prokaryotes can be manipulated to develop more effective antibacterial drugs for human or animal use.
RNA Performs Diverse...
6.5K
Nucleic Acid Structure01:25

Nucleic Acid Structure

7.1K
The pentose sugar in DNA is deoxyribose, while in RNA the pentose sugar is ribose. The difference between the sugars is the presence of the hydroxyl group on the ribose's second carbon and a hydrogen on the deoxyribose's second carbon. The phosphate residue attaches to the hydroxyl group of the 5′ carbon of one sugar and the hydroxyl group of the 3′ carbon of the sugar of the next nucleotide, which forms  a 5′ to 3′ phosphodiester linkage.
DNA Structure
DNA...
7.1K
Nonsense-mediated mRNA Decay02:27

Nonsense-mediated mRNA Decay

10.8K
The Upf proteins that carry out nonsense-mediated decay (NMD) are found in all eukaryotic organisms, including humans. Each protein has an individual role, but they need to work in collaboration. Upf1 is an ATP-dependent RNA helicase that unwinds the RNA helix. Because Upf1 can unwind any RNA, Upf2 and Upf3 are required to help Upf1 discriminate between nonsense and normal mRNAs.
Usually, Upf3 binds to an Exon Junction Complex (EJC) at mRNA splice sites. If a ribosome fully translates the mRNA,...
10.8K

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相关实验视频

Updated: Sep 14, 2025

2D-HELS MS Seq: A General LC-MS-Based Method for Direct and de novo Sequencing of RNA Mixtures with Different Nucleotide Modifications
05:41

2D-HELS MS Seq: A General LC-MS-Based Method for Direct and de novo Sequencing of RNA Mixtures with Different Nucleotide Modifications

Published on: July 10, 2020

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化学解码策略用于检测RNA修饰,动态和结构的化学解码策略.

Xiao Shu1, Wenping Li1

  • 1College of Materials and Chemistry & Chemical Engineering, Chengdu University of Technology, Chengdu 610059, China. shuxiao@cdut.edu.cn.

Chemical communications (Cambridge, England)
|July 23, 2025
PubMed
概括

最近的化学解码策略精确地绘制了RNA的修饰,动态和结构. 这些基于测序的方法为了解RNA提供了强大的工具.

科学领域:

  • 分子生物学分子生物学
  • 化学生物学 化学生物学
  • 基因组学就是基因组学.

背景情况:

  • RNA的修改,动态和结构是影响基因表达和生物过程的关键调节层.
  • 准确检测和解释这些RNA特征对于理解细胞功能至关重要.

研究的目的:

  • 审查RNA分析的核酸向化学反应的最新进展.
  • 突出基于测序的解码方法来绘制和量化RNA修饰,动态和结构.

主要方法:

  • 利用特定地点的化学反应改变核基或破坏局部结构.
  • 采用基于测序的解码,在特定的RNA位点产生可检测的信号 (突变,终结,删除).
  • 将化学工具与测序和成像集成为全面的RNA景观分析.

主要成果:

  • 化学解码策略可以在单核酸分辨率下精确地绘制和量化RNA修饰.
  • 这些方法促进了RNA动态的监测和RNA结构构成的表征.
  • 创新的化学工具为解码复杂的RNA景观提供了强大的策略.

结论:

  • 最近的化学解码策略代表了RNA分析的重大进步.

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Probing RNA Structure with Dimethyl Sulfate Mutational Profiling with Sequencing In Vitro and in Cells

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相关实验视频

Last Updated: Sep 14, 2025

2D-HELS MS Seq: A General LC-MS-Based Method for Direct and de novo Sequencing of RNA Mixtures with Different Nucleotide Modifications
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2D-HELS MS Seq: A General LC-MS-Based Method for Direct and de novo Sequencing of RNA Mixtures with Different Nucleotide Modifications

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Characterizing RNA Modifications in Single Neurons Using Mass Spectrometry

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Probing RNA Structure with Dimethyl Sulfate Mutational Profiling with Sequencing In Vitro and in Cells
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Probing RNA Structure with Dimethyl Sulfate Mutational Profiling with Sequencing In Vitro and in Cells

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  • 这些方法为阐明与RNA相关的生物功能提供了强大的工具.
  • 化学方法与测序和成像的整合对未来的RNA研究具有很大的前景.