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相关概念视频

Horizontal Gene Transfer01:27

Horizontal Gene Transfer

145
Horizontal gene transfer (HGT) is a process where genetic material moves between organisms within the same generation, unlike vertical gene transfer, which occurs from parent to offspring. HGT plays a crucial role in microbial evolution, adaptation, and survival, particularly in shared environments like the human gut.Mobile genetic elements such as plasmids, prophages, integrons, insertion sequences, and transposons facilitate this process. HGT occurs through three primary mechanisms:...
145
Types of Genetic Transfer Between Organisms02:18

Types of Genetic Transfer Between Organisms

29.4K
Genetic transfer occurs when genetic information is passed from one organism to another. It occurs via two mechanisms: vertical gene transfer and horizontal gene transfer. Vertical gene transfer occurs when genetic information is transferred from one generation to the next, which happens much more frequently than horizontal gene transfer. Both sexual and asexual reproduction are forms of vertical gene transfer, where one or more organisms pass some or all of their genome onto their progeny.
29.4K
Evolutionary Relationships through Genome Comparisons02:54

Evolutionary Relationships through Genome Comparisons

6.2K
Genome comparison is one of the excellent ways to interpret the evolutionary relationships between organisms. The basic principle of genome comparison is that if two species share a common feature, it is likely encoded by the DNA sequence conserved between both species. The advent of genome sequencing technologies in the late 20th century enabled scientists to understand the concept of conservation of domains between species and helped them to deduce evolutionary relationships across diverse...
6.2K
Gene Evolution - Fast or Slow?02:05

Gene Evolution - Fast or Slow?

7.4K
The genomes of eukaryotes are punctuated by long stretches of sequence which do not code for proteins or RNAs. Although some of these regions do contain crucial regulatory sequences, the vast majority of this DNA serves no known function. Typically, these regions of the genome are the ones in which the fastest change, in evolutionary terms, is observed, because there is typically little to no selection pressure acting on these regions to preserve their sequences.
In contrast, regions which code...
7.4K
Gene Duplication and Divergence02:37

Gene Duplication and Divergence

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The seminal work of Ohno in 1970 popularized the idea of gene duplication and divergence. DNA sequence comparison studies reveal that a large portion of the genes in bacteria, archaebacteria, and eukaryotes was  generated by gene duplication and divergence, indicating its critical role in evolution.
The duplicated copies of the gene are called Paralogs. Paralogs with similar sequences and functions form a gene family. Across several species, a large number of gene families are...
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Phylogenetic Trees03:21

Phylogenetic Trees

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Phylogenetic trees come in many forms. It matters in which sequence the organisms are arranged from the bottom to the top of the tree, but the branches can rotate at their nodes without altering the information. The lines connecting individual nodes can be straight, angled, or even curved.
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相关实验视频

Updated: Sep 13, 2025

Using Phylogenetic Analysis to Investigate Eukaryotic Gene Origin
08:57

Using Phylogenetic Analysis to Investigate Eukaryotic Gene Origin

Published on: August 14, 2018

16.0K

横向基因转移推断:基因存在-缺席表现优于基因树

Swastik Mishra1, Martin J Lercher1

  • 1Institute for Computer Science and Department of Biology, Heinrich Heine University, Düsseldorf, Germany.

Molecular biology and evolution
|July 28, 2025
PubMed
概括

水平基因转移 (HGT) 是 prokaryotic 进化的关键. 这项研究对HGT推断方法进行了基准测试,发现基因存在/缺失分析优于基因组调和,挑战了先前的假设.

科学领域:

  • 进化生物学 进化生物学
  • 基因组学就是基因组学.
  • 生物信息学是一种生物信息学.

背景情况:

  • 横向基因转移 (HGT) 显著推动 prokaryotic 进化和适应.
  • 缺乏对HGT推理方法的系统比较,阻碍了对其性能的理解.
  • 由于缺少基因组化石记录,验证HGT推断是很困难的,通常依赖于潜在的偏见模拟.

研究的目的:

  • 系统地评估和比较各种方法的准确性,以推断水平基因转移.
  • 评估基于基因家族存在/缺席模式与基因树-物种树和解方法的性能.
  • 为选择合适的HGT推断工具提供一个基准,并指导未来的方法开发.

主要方法:

  • 利用HGT事件的倾向涉及多个邻近基因进行评估.
  • 分析跨物种树的基因家族存在/缺席模式的比较方法.
  • 将这些与基于基因树-物种树和解的方法进行对比.

主要成果:

  • 分析基因家族存在/缺席模式的方法始终优于基因树-物种树和解方法.
  • 没有发现明确的遗传学和解方法优于更简单的隐性方法.
  • 建立了HGT推理方法的全面基准.
关键词:
HGT 的推断推断.显式的遗传学方法.基因存在/缺失的概况横向基因转移是指水平基因转移.隐含的家族遗传学方法调解模式的调解模型

更多相关视频

Heuristic Mining of Hierarchical Genotypes and Accessory Genome Loci in Bacterial Populations
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Heuristic Mining of Hierarchical Genotypes and Accessory Genome Loci in Bacterial Populations

Published on: December 7, 2021

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Genetic Mapping of Thermotolerance Differences Between Species of Saccharomyces Yeast via Genome-Wide Reciprocal Hemizygosity Analysis
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Genetic Mapping of Thermotolerance Differences Between Species of Saccharomyces Yeast via Genome-Wide Reciprocal Hemizygosity Analysis

Published on: August 12, 2019

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相关实验视频

Last Updated: Sep 13, 2025

Using Phylogenetic Analysis to Investigate Eukaryotic Gene Origin
08:57

Using Phylogenetic Analysis to Investigate Eukaryotic Gene Origin

Published on: August 14, 2018

16.0K
Heuristic Mining of Hierarchical Genotypes and Accessory Genome Loci in Bacterial Populations
08:03

Heuristic Mining of Hierarchical Genotypes and Accessory Genome Loci in Bacterial Populations

Published on: December 7, 2021

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Genetic Mapping of Thermotolerance Differences Between Species of Saccharomyces Yeast via Genome-Wide Reciprocal Hemizygosity Analysis
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Genetic Mapping of Thermotolerance Differences Between Species of Saccharomyces Yeast via Genome-Wide Reciprocal Hemizygosity Analysis

Published on: August 12, 2019

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结论:

  • 基因存在/缺席分析是推断水平基因转移的更准确的方法,而不是家族遗传调和.
  • 这项研究挑战了复杂的遗传学方法在HGT检测中本质上优越的假设.
  • 为方法选择提供了实际指导,并确定了HGT推理的未来研究方向.