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相关概念视频

Introduction to Mechanisms of Enzyme Catalysis01:13

Introduction to Mechanisms of Enzyme Catalysis

8.8K
For many years, scientists thought that enzyme-substrate binding took place in a simple "lock-and-key" fashion. This model stated that the enzyme and substrate fit together perfectly in one instantaneous step. However, current research supports a more refined view scientists call induced fit. The induced-fit model expands upon the lock-and-key model by describing a more dynamic interaction between enzyme and substrate. As the enzyme and substrate come together, their interaction causes...
8.8K
Induced-fit Model01:13

Induced-fit Model

82.2K
Most chemical reactions in cells require enzymes—biological catalysts that speed up the reaction without being consumed or permanently changed. They reduce the activation energy needed to convert the reactants into products. Enzymes are proteins, that usually work by binding to a substrate—a reactant molecule that they act upon.
Enzymes exhibit substrate specificity, meaning that they can only bind to certain substrates. This is mainly determined by the shape and chemical...
82.2K
Enzymes02:34

Enzymes

82.7K
Inside living organisms, enzymes act as catalysts for many biochemical reactions involved in cellular metabolism. The role of enzymes is to reduce the activation energies of biochemical reactions by forming complexes with its substrates. The lowering of activation energies favor an increase in the rates of biochemical reactions.
Enzyme deficiencies can often translate into life-threatening diseases. For example, a genetic abnormality resulting in the deficiency of the enzyme G6PD...
82.7K
Enzyme Kinetics01:19

Enzyme Kinetics

98.8K
Enzymes speed up reactions by lowering the activation energy of the reactants. The speed at which the enzyme turns reactants into products is called the rate of reaction. Several factors impact the rate of reaction, including the number of available reactants. Enzyme kinetics is the study of how an enzyme changes the rate of a reaction.
Scientists typically study enzyme kinetics with a fixed amount of enzyme in the controlled environment of a test tube. When more reactant, or substrate, is...
98.8K
Introduction to Enzyme Kinetics01:19

Introduction to Enzyme Kinetics

20.8K
Enzyme kinetics studies the rates of biochemical reactions. Scientists monitor the reaction rates for a particular enzymatic reaction at various substrate concentrations. Additional trials with inhibitors or other molecules that affect the reaction rate may also be performed.
The experimenter can then plot the initial reaction rate or velocity (Vo) of a given trial against the substrate concentration ([S]) to obtain a graph of the reaction properties. For many enzymatic reactions involving a...
20.8K
Catalytically Perfect Enzymes01:07

Catalytically Perfect Enzymes

4.1K
The theory of catalytically perfect enzymes was first proposed by W.J. Albery and J. R. Knowles in 1976. These enzymes catalyze biochemical reactions at high-speed. Their catalytic efficiency values range from 108-109 M-1s-1. These enzymes are also called 'diffusion-controlled' as the only rate-limiting step in the catalysis is that of the substrate diffusion into the active site. Examples include triose phosphate isomerase, fumarase, and superoxide dismutase.
 
Most enzymes...
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相关实验视频

Updated: Sep 13, 2025

Modeling an Enzyme Active Site using Molecular Visualization Freeware
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Modeling an Enzyme Active Site using Molecular Visualization Freeware

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SubTuner利用基于物理的建模来补充人工智能在酶工程中的非本地基质.

Qianzhen Shao1, Asher C Hollenbeak2, Yaoyukun Jiang1

  • 1Department of Chemistry, Vanderbilt University, Nashville, Tennessee 37235, United States.

Chem catalysis
|July 28, 2025
PubMed
概括

新的计算工具SubTuner通过预测有益的酶突变来加速新基质的酶工程. 这种基于物理学的方法优于扩大酶基质范围的现有方法.

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Unraveling Entropic Rate Acceleration Induced by Solvent Dynamics in Membrane Enzymes
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Unraveling Entropic Rate Acceleration Induced by Solvent Dynamics in Membrane Enzymes

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Defining Substrate Specificities for Lipase and Phospholipase Candidates
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Defining Substrate Specificities for Lipase and Phospholipase Candidates

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Modeling an Enzyme Active Site using Molecular Visualization Freeware

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Unraveling Entropic Rate Acceleration Induced by Solvent Dynamics in Membrane Enzymes
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Unraveling Entropic Rate Acceleration Induced by Solvent Dynamics in Membrane Enzymes

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科学领域:

  • 生物化学 生物化学
  • 计算生物学 计算生物学
  • 酵素工程是什么? 酶工程是什么

背景情况:

  • 酶工程旨在创建具有新功能的酶.
  • 识别非本地基质的酶突变是具有挑战性的.
  • 现有的生物信息学和机器学习工具存在局限性.

研究的目的:

  • 开发SubTuner,一个基于物理的计算工具,用于识别在非本地基质上增强活性的酶突变体.
  • 为了评估SubTuner的准确性,速度,概括性和先验预测性.

主要方法:

  • 开发了SubTuner,一个基于物理的计算工具.
  • 对非原生S-adenosyl-l-methionine模拟合成的阳离子甲基转移酶突变体进行测试的SubTuner.
  • 执行了三项任务,涉及单点和多点突变物与不同的基板.
  • 结合了计算预测和实验性表征.

主要成果:

  • SubTuner成功地为非本地基质识别了有益的酶突变物.
  • 与现有工具相比,在准确性,速度和通用性方面表现出卓越的性能.
  • 验证了对较大的基板的先验预测性.

结论:

  • SubTuner显著加快了基质范围扩展的酶工程.
  • 该工具基于物理学的方法提供了定量准确性和机制洞察力.
  • 在进步酶工程应用方面,SubTuner具有显著的潜力.