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相关概念视频

RNA Structure01:23

RNA Structure

72.5K
Overview
The basic structure of RNA consists of a five-carbon sugar and one of four nitrogenous bases. Although most RNA is single-stranded, it can form complex secondary and tertiary structures. Such structures play essential roles in the regulation of transcription and translation.
Different Types of RNA Have the Same Basic Structure
There are three main types of ribonucleic acid (RNA): messenger RNA (mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA). All three RNA types consist of a...
72.5K
Nucleic Acid Structure01:25

Nucleic Acid Structure

7.1K
The pentose sugar in DNA is deoxyribose, while in RNA the pentose sugar is ribose. The difference between the sugars is the presence of the hydroxyl group on the ribose's second carbon and a hydrogen on the deoxyribose's second carbon. The phosphate residue attaches to the hydroxyl group of the 5′ carbon of one sugar and the hydroxyl group of the 3′ carbon of the sugar of the next nucleotide, which forms  a 5′ to 3′ phosphodiester linkage.
DNA Structure
DNA...
7.1K
RNA-seq03:21

RNA-seq

10.4K
RNA sequencing, or RNA-Seq, is a high-throughput sequencing technology used to study the transcriptome of a cell. Transcriptomics helps to interpret the functional elements of a genome and identify the molecular constituents of an organism. Additionally, it also helps in understanding the development of an organism and the occurrence of diseases. 
Before the discovery of RNA-seq, microarray-based methods and Sanger sequencing were used for transcriptome analysis. However, while...
10.4K
Ribosome Profiling02:24

Ribosome Profiling

3.6K
Ribosome profiling or ribo-sequencing is a deep sequencing technique that produces a snapshot of active translation in a cell. It selectively sequences the mRNAs protected by ribosomes to get an insight into a cell’s translation landscape at any given point in time.
Applications of ribosome profiling
Ribosome profiling has many applications, including in vivo monitoring of translation inside a particular organ or tissue type and quantifying new protein synthesis levels.
The technique...
3.6K

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相关实验视频

Updated: Sep 13, 2025

RNA Secondary Structure Prediction Using High-throughput SHAPE
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RNA Secondary Structure Prediction Using High-throughput SHAPE

Published on: May 31, 2013

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SEISMICgraph:一种基于网络的RNA结构数据可视化工具.

Federico Fuchs Wightman1, Grant Yang1, Yves J Martin des Taillades2

  • 1Department of Microbiology, Harvard School of Medicine, Boston, MA 02115, United States.

Nucleic acids research
|July 31, 2025
PubMed
概括
此摘要是机器生成的。

SEISMICgraph是一个用于RNA结构研究的新网络工具. 它可视化化学探测数据,帮助研究RNA修饰和核糖突变.

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Investigating Protein Sequence-structure-dynamics Relationships with Bio3D-web
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Investigating Protein Sequence-structure-dynamics Relationships with Bio3D-web

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Probing RNA Structure with Dimethyl Sulfate Mutational Profiling with Sequencing In Vitro and in Cells
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Probing RNA Structure with Dimethyl Sulfate Mutational Profiling with Sequencing In Vitro and in Cells

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相关实验视频

Last Updated: Sep 13, 2025

RNA Secondary Structure Prediction Using High-throughput SHAPE
13:42

RNA Secondary Structure Prediction Using High-throughput SHAPE

Published on: May 31, 2013

31.7K
Investigating Protein Sequence-structure-dynamics Relationships with Bio3D-web
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Investigating Protein Sequence-structure-dynamics Relationships with Bio3D-web

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Probing RNA Structure with Dimethyl Sulfate Mutational Profiling with Sequencing In Vitro and in Cells
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Probing RNA Structure with Dimethyl Sulfate Mutational Profiling with Sequencing In Vitro and in Cells

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科学领域:

  • 分子生物学分子生物学
  • 生物信息学是一种生物信息学.
  • 结构生物学 结构生物学

背景情况:

  • RNA在基因调节中发挥着至关重要的作用,超越了遗传信息传输.
  • 化学探测技术已经推进了RNA二次结构识别.
  • 高分辨率RNA结构分析对于理解调节功能至关重要.

研究的目的:

  • 介绍SEISMICgraph,一种基于网络的RNA结构研究工具.
  • 为化学探测数据提供数据可视化和分析.
  • 促进跨序列和条件的RNA结构的比较.

主要方法:

  • 开发一个用户友好的,基于Web的平台 (SEISMIC图).
  • 为化学探测方式集成数据可视化.
  • 应用用于研究核糖转换器和RNA修饰,如伪尿化.

主要成果:

  • SEISMICgraph可以在没有编程的情况下同时比较数据.
  • 在分析腺因依赖的结构变化方面已证明有用.
  • 可视化了伪化对RNA结构转换的影响.

结论:

  • SEISMICgraph为RNA结构和功能提供了新的见解.
  • 该工具支持对RNA修饰和调控元素的研究.
  • 建立了未来RNA结构分析应用的基础.