解开相互作用类型对内在无序蛋白质链相位分离的影响
Yuan-Qiang Chen1, Yan-Jing Sheng1, Yu-Qiang Ma2,3
1Center for Soft Condensed Matter Physics and Interdisciplinary Research, School of Physical Science and Technology, Soochow University, Suzhou 215006, China.
The Journal of chemical physics
|August 1, 2025
概括
不同的相互作用,如疏水和特定的相互作用,驱动生物分子凝聚物 (由液体-液体相分离形成) 的形成. 特定的相互作用产生更稳定的凝聚物,而疏水性凝聚物形成动态集群,影响细胞过程.
科学领域:
- 生物化学和分子生物学
- 计算生物物理学的计算生物物理学
背景情况:
- 生物分子凝聚物对细胞功能至关重要,通过液态液相分离 (LLPS) 形成.
- 了解LLPS中不同分子相互作用的具体作用是必不可少的,但尚未得到充分研究.
研究的目的:
- 研究水和特定相互作用如何影响内在无序蛋白质 (IDP) 链的相分离行为.
- 分析相互作用类型对凝结体结构,材料特性和动态的影响.
主要方法:
- 我们使用了散射粒子动力学 (DPD) 模拟.
- 分析的重点是网络结构,材料特性和IDP链在不同相互作用强度下的动态行为.
主要成果:
- 疏水和特定相互作用都会诱导LLPS,但结果不同.
- 疏水性相互作用产生动态集群,而特异性相互作用形成稳定的凝结物,IDP的流动性降低.
- 凝聚剂粘度和扩散系数根据相互作用类型显著不同;交替链上的特定相互作用没有诱导相位分离.
结论:
- 相互作用的类型决定了生物分子凝聚物的相分离行为和材料特性.
- 研究结果为精确控制生物系统和治疗应用中的凝结物属性提供了洞察力.
相关概念视频
Intrinsically Disordered Proteins
18.2K
Intrinsically disordered proteins are a group of proteins that do not fold into specific three-dimensional structures. Their structural flexibility allows them to complement ordered proteins to perform functions that are inaccessible to rigid structures. They are more common in eukaryotes than prokaryotes and may either be exclusively intrinsically disordered or hybrid proteins, consisting of a mix of ordered and disordered regions. The absence of a rigid structure in these proteins can be...
18.2K
Protein-protein Interfaces
13.3K
Many proteins form complexes to carry out their functions, making protein-protein interactions (PPIs) essential for an organism's survival. Most PPIs are stabilized by numerous weak noncovalent chemical forces. The physical shape of the interfaces determines the way two proteins interact. Many globular proteins have closely-matching shapes on their surfaces, which form a large number of weak bonds. Additionally, many PPIs occur between two helices or between a surface cleft and a...
13.3K
Protein Folding
121.4K
Overview
121.4K
Noncovalent Attractions in Biomolecules
55.1K
Noncovalent attractions are associations within and between molecules that influence the shape and structural stability of complexes. These interactions differ from covalent bonding in that they do not involve sharing of electrons.
Four types of noncovalent interactions are hydrogen bonds, van der Waals forces, ionic bonds, and hydrophobic interactions.
Hydrogen bonding results from the electrostatic attraction of a hydrogen atom covalently bonded to a strong-electronegative atom like oxygen,...
Four types of noncovalent interactions are hydrogen bonds, van der Waals forces, ionic bonds, and hydrophobic interactions.
Hydrogen bonding results from the electrostatic attraction of a hydrogen atom covalently bonded to a strong-electronegative atom like oxygen,...
55.1K
Molecular Chaperones and Protein Folding
18.5K
The native conformation of a protein is formed by interactions between the side chains of its constituent amino acids. When the amino acids cannot form these interactions, the protein cannot fold by itself and needs chaperones. Notably, chaperones do not relay any additional information required for the folding of polypeptides; the native conformation of a protein is determined solely by its amino acid sequence. Chaperones catalyze protein folding without being a part of the folded protein.
The...
The...
18.5K
Protein Organization
7.1K
Proteins are polymers of amino acid residues. They are versatile and responsible for different cellular functions, including DNA replication, molecular transport, catalysis, and structural support. Proteins have a hierarchical structure comprising at least three levels of organization: primary, secondary, and tertiary structure. Some large proteins have a quaternary structure where individual protein subunits are linked together.
The primary structure of a protein is its amino acid sequence....
The primary structure of a protein is its amino acid sequence....
7.1K


