对GPCRs体调节的有效表征:应用于De Novo S1PR1体调节器的合理设计
Alejandro Cruz1,2, Arieh Warshel1
1Department of Chemistry, University of Southern California, Los Angeles, California 90089-1062, United States.
Journal of chemical information and modeling
|August 4, 2025
概括
这项研究引入了一种新的计算方法来分析G蛋白结合受体 (GPCR) 的全调制,使得能够设计具有较少副作用的向治疗方法.
科学领域:
- 生物化学 生物化学
- 计算生物学 计算生物学
- 药理学 药理学是指药理学的学科.
背景情况:
- G蛋白结合受体 (GPCRs) 对于细胞信号传递至关重要,并与许多疾病有关.
- 传统的正统药物向往往会导致副作用,突出显示出需要替代策略.
- 阿洛斯特基调制提供了一种有前途的方法,以提高特异性和减少不良影响来准GPCRs.
研究的目的:
- 开发和验证一个全面的计算方法来研究GPCR全调制.
- 计算GPCR激活过程及其复合体的自由能量概况.
- 为了促进GPCRs的新型全调节剂的合理设计.
主要方法:
- 利用向分子动力学 (TMD) 模拟来生成中间的GPCR激活结构.
- 在线性响应近似 (LRA) 框架 (PDLD/S-LRA-2000) 中采用了蛋白质二极管朗格温二极管 (PDLD) 方法.
- 集成了一种精制的粗粒度 (CG) 模型,用于具有隐性膜的GPCRs,以计算结合和构造自由能量,考虑细胞膜效应.
主要成果:
- 成功开发和验证了一种用于评估GPCR全调节的计算方法.
- 将该方法应用于神素1-酸盐受体1 (S1PR1),部分阐明了其全调节机制.
- 基于计算预测,为S1PR1实现了新一代纯正全调节器的理性设计.
结论:
- 提出的方法提供了一个强大的工具,用于调查GPCR全调节和激活过程.
- 这种方法可以显著提高对GPCR功能的理解,并有助于开发新疗法.
- 这项研究鼓励进一步探索GPCR相关疾病的全调节.
相关概念视频
G Protein-coupled Receptors
13.4K
G Protein-Coupled Receptors or GPCRs are membrane-bound receptors that transiently associate with heterotrimeric G proteins and induce an appropriate response to sensory stimuli such as light, odors, hormones, cytokines, or neurotransmitters.
GPCRs are also called heptahelical, 7TM, or serpentine receptors, and consist of seven (H1-H7) transmembrane alpha-helices that span the bilayer to form a cylindrical core. The transmembrane helices are connected by three extracellular loops and three...
GPCRs are also called heptahelical, 7TM, or serpentine receptors, and consist of seven (H1-H7) transmembrane alpha-helices that span the bilayer to form a cylindrical core. The transmembrane helices are connected by three extracellular loops and three...
13.4K
GPCRs Regulate Adenylyl Cylase Activity
5.9K
Some GPCRs transmit signals through adenylyl cyclase (AC), a transmembrane enzyme. AC helps synthesize second messenger cyclic adenosine monophosphate (cAMP). AC catalyzes cyclization reaction and converts ATP to cAMP by releasing a pyrophosphate. The pyrophosphate is further hydrolyzed to phosphate by the enzyme pyrophosphatase, which drives cAMP synthesis to completion. However, cAMP is rapidly degraded to 5′ AMP by the enzymes phosphodiesterase (PDE), preventing overstimulation of...
5.9K
Transducer Mechanism: G Protein–Coupled Receptors
2.4K
G Protein–Coupled Receptors (GPCRs) are membrane-bound receptors that transiently associate with heterotrimeric G proteins and induce an appropriate response to various stimuli. GPCRs regulate critical physiological pathways and are excellent drug targets for treating diseases such as diabetes, cancer, obesity, depression, or Alzheimer's. Nearly 35% of approved drugs implement their therapeutic effects by selectively interacting with specific GPCRs.
GPCRs are also called heptahelical,...
GPCRs are also called heptahelical,...
2.4K
Allosteric Regulation
59.1K
Allosteric regulation of enzymes occurs when the binding of an effector molecule to a site that is different from the active site causes a change in the enzymatic activity. This alternate site is called an allosteric site, and an enzyme can contain more than one of these sites. Allosteric regulation can either be positive or negative, resulting in an increase or decrease in enzyme activity. Most enzymes that display allosteric regulation are metabolic enzymes involved in the degradation or...
59.1K
The Two-State Receptor Model
2.4K
The two-state receptor model explains a drug's interaction with receptors, such as G protein-coupled receptors and ligand-gated ion channels, to induce or inhibit a biological response. When no natural ligands are present, a receptor exists in an equilibrium of inactive (Ri) and active (Ra) conformations. The inactive form does not produce a response, while the active form generates a basal effect known as constitutive activity.
The binding affinity of a drug determines its interaction with...
The binding affinity of a drug determines its interaction with...
2.4K
GPCR Desensitization
6.5K
G protein-coupled receptor (GPCR) signaling plays a crucial role in cell functioning. GPCR desensitization is an equally essential process. It allows cells to respond to changing environments and regain sensitivity to new stimuli while preventing unnecessary stimulation when no longer needed. Prolonged exposure to stimuli leads to GPCR desensitization. It involves blocking the receptors from binding and activating additional G proteins. This inhibits activation of downstream effectors, thereby...
6.5K


