使用组合蛋白语言模型预测皮下抗体的生物可用性
Miles Cabreza1, William Hojegian1, I-En Wu1
1Department of Chemical Engineering and Materials Science, Stevens Institute of Technology, Hoboken 07030, New Jersey United States.
Molecular pharmaceutics
|August 5, 2025
概括
通过新的机器学习框架,预测单克隆抗体 (mAb) 皮下生物可用性变得更加容易. 这种方法使用蛋白质语言模型 (PLM) 准确预测生物可用性,加速治疗开发.
科学领域:
- 生物技术是生物技术.
- 计算生物学 计算生物学
- 药理学 药理学是指药理学的学科.
背景情况:
- 单克隆抗体 (mAbs) 是重要的治疗方法.
- 由于复杂的SC环境和当前实验模型的局限性,难以预测mAbs的皮下 (SC) 生物可用性.
研究的目的:
- 开发一种新的机器学习框架,用于预测mAb的皮下生物可用性.
- 利用蛋白质语言模型 (PLM) 提高预测准确性和可访问性.
主要方法:
- 利用三个不同的PLM (antiBERTy,ABlang,ESM-2) 来从抗体序列中提取高维嵌入物.
- 应用特征选择和维度减小来完善数值表示.
- 开发了一个集体模型,使用一个调整的支持向量机器分类器,使用Leave-One-Out交叉验证.
主要成果:
- 对于组合模型,实现了89%的验证准确性.
- 整体方法,汇总抗体的预测,与以前的计算方法相比,显示出更高的性能.
- 开发和部署了SubQAvail网络应用程序,用于可访问的生物可用性预测.
结论:
- 整合PLM衍生功能的组合学习显著提高了mAb生物可用性评估的准确性和可扩展性.
- 该 SubQAvail 应用程序促进了快速预测,加速了单克隆抗体的治疗开发管道.
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