通过PhIX-MS和冷电子显微镜在原生蛋白质体上的动态相互作用体结构
Kitaik Lee1, Hitendra Negi2, Xiang Chen2
1Structural System Biology Section, Center for Structural Biology, Center for Cancer Research, National Cancer Institute (NCI), National Institutes of Health, Frederick, MD 21702-1201, USA.
bioRxiv : the preprint server for biology
|August 6, 2025
概括
我们开发了PhIX-MS来绘制蛋白质酶体内的短暂蛋白质相互作用. 这种方法揭示了关键蛋白质的精确位置,改善了我们对蛋白质酶组合和功能的理解.
科学领域:
- 结构生物学 结构生物学
- 蛋白质组学是指蛋白质组学.
- 分子细胞生物学 分子细胞生物学
背景情况:
- 蛋白质酶的功能依赖于短暂的蛋白质相互作用,这些相互作用很难从结构上研究.
- 了解这些相互作用对于阐明蛋白质酶组合和调节至关重要.
研究的目的:
- 开发和应用一种新的结构性蛋白质组学工作流程,PhIX-MS,以绘制蛋白质体内的短暂蛋白质相互作用.
- 解决关键蛋白酶相关蛋白质的原生,低亲和度相互作用.
主要方法:
- 照相诱导的现场交联质谱 (PhIX-MS) 用于稳定细胞中的短暂相互作用.
- 电子显微镜 (cryo-EM) 用于结构的确定.
- 用于计算结构预测的AlphaFold建模.
主要成果:
- PhIX-MS将氧化还原传感器TXNL1映射到蛋白质酶调节粒子 (RP),详细说明其域位.
- 陪伴者PSMD5与RP结合时被解脱,阻止了蛋白质溶解核心粒子 (CP) 的结合.
- 乌比奎丁结合酶 UBE3C/Hul5 局限于RP,这表明与RPN11.11的结合活性.
结论:
- PhIX-MS成功地捕获了现场短暂相互作用的拓信息.
- 该研究提供了对蛋白酶体调节机制的高分辨率结构洞察.
- 这种综合性方法广泛适用于动态宏分子组件.
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