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Protein Folding01:25

Protein Folding

8.5K
Proteins are chains of amino acids linked together by peptide bonds. Upon synthesis, a protein folds into a three-dimensional conformation, critical to its biological function. Interactions between its constituent amino acids guide protein folding, and hence the protein structure is primarily dependent on its amino acid sequence.
Protein Structure Is Critical to Its Biological Function
Proteins perform a wide range of biological functions such as catalyzing chemical reactions, providing...
8.5K
Bacterial Protein Maturation01:26

Bacterial Protein Maturation

81
Bacterial protein maturation is a tightly regulated process that ensures newly synthesized polypeptides achieve correct functional conformations. This maturation involves a series of modifications, folding events, and quality control steps, often assisted by specialized chaperone proteins.N-Terminal ModificationsThe maturation of bacterial polypeptides begins cotranslationally as the polypeptide exits the ribosome. The first amino acid, N-formylmethionine (fMet), is typically modified at the...
81
Molecular Chaperones and Protein Folding03:00

Molecular Chaperones and Protein Folding

18.4K
The native conformation of a protein is formed by interactions between the side chains of its constituent amino acids. When the amino acids cannot form these interactions, the protein cannot fold by itself and needs chaperones. Notably, chaperones do not relay any additional information required for the folding of polypeptides; the native conformation of a protein is determined solely by its amino acid sequence. Chaperones catalyze protein folding without being a part of the folded protein.
The...
18.4K
Amyloid Fibrils03:03

Amyloid Fibrils

9.8K
Amyloid fibrils are aggregates of misfolded proteins.  Under most circumstances, misfolded proteins are either refolded by chaperone proteins or degraded by the proteasome. However, in the case of a mutation or a disease, these proteins can accumulate to form large clusters and often further assemble to form elongated fibers, called fibrils. 
Amyloid deposits were observed as early as 1639 in the liver and the spleen.   In 1854, Rudolph Virchow performed iodine staining,...
9.8K
Proteins: From Genes to Degradation02:11

Proteins: From Genes to Degradation

12.6K
Within a biological system, the DNA encodes the RNA, and the nucleotide sequence in the RNA further defines the amino acid sequence in the protein. This is referred to as “The Central Dogma of Molecular Biology” - a term coined by Francis Crick.  Central dogma is a firm principle in biology that defines the flow of genetic information within any life form. The two fundamental steps in central dogma are - transcription and translation.
Transcription is the synthesis of RNA...
12.6K
Protein Folding Quality Check in the RER01:29

Protein Folding Quality Check in the RER

3.8K
ER is the primary site for the maturation and folding of soluble and transmembrane secretory proteins. The calnexin cycle is a specific chaperone system that folds and assesses the confirmation of N-glycosylated proteins before they can exit the ER lumen. The primary players of this quality check pipeline are the lectins, ER-resident chaperones, and a glucosyl transferase enzyme. In case the calnexin system in the lumen fails to salvage a misfolded protein, it is transported to the cytoplasm...
3.8K

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Updated: Sep 8, 2025

4D Imaging of Protein Aggregation in Live Cells
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4D Imaging of Protein Aggregation in Live Cells

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解码蛋白稳定:对聚合,溶性和展开机制的影响.

Martin Havlásek1,2, Sérgio M Marques1,2, Veronika Szotkowská1

  • 1Loschmidt Laboratories, Department of Experimental Biology and RECETOX, Faculty of Science, Masaryk University, Kotlarska 2, Brno 611 37, Czech Republic.

Journal of chemical information and modeling
|August 6, 2025
PubMed
概括

在醇脱基酶中稳定突变可能会意外地降低溶解度. 这项研究揭示了密码聚合易发生的区域和增加的表面水性作为导致工程蛋白质溶解率降低的关键因素.

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科学领域:

  • 生物化学 生物化学
  • 蛋白质工程是指蛋白质工程.
  • 计算生物学 计算生物学

背景情况:

  • 计算工具预测蛋白质稳定性的突变影响,但可能会对活性或溶解性产生负面影响.
  • 甲脱酶 (DhaA115和LinB116) 是同类的,但在溶解度上有显著差异.
  • 尽管稳定了,但LinB116的溶解性和聚合性很差,几十年来仍然无法解释.

研究的目的:

  • 在计算稳定甲脱酶中研究减少溶解度和聚合倾向背后的分子机制.
  • 要了解为什么稳定对LinB116与DhaA115.5相比的可溶性产生负面影响.
  • 识别导致超稳定酶中蛋白质溶解性差的因素.

主要方法:

  • 结合实验技术与in-silico方法,包括分子动力学模拟.
  • 分析了与蛋白质聚合相关的展开机制.
  • 研究了稳定对DhaA115和LinB116.6的溶解性和聚合倾向的影响.

主要成果:

  • 鉴定出密码聚合易发生的区域和增加的表面疏水性作为LinB116可溶性降低的关键因素.
  • 在聚合的背景下展开的机制解释了LinB116.16中稳定的负面后果.
  • 分子动力学模拟显示,在LinB116展开时,暴露的区域表现出聚合倾向.

结论:

  • 发现了超稳定脱酶展开的新型分子机制.
  • 在蛋白质工程中,上下文信息至关重要,以防止稳定突变对蛋白质溶解性产生负面影响.
  • 了解蛋白质的展开和聚合是成功蛋白质工程的关键.