巨大的染色体外元素"Inocle"可能会扩大人类口腔微生物组的适应能力
Yuya Kiguchi1,2, Nagisa Hamamoto3,4, Yukie Kashima5
1Department of Computational Biology and Medical Sciences, Graduate School of Frontier Sciences, The University of Tokyo, Kashiwa, Japan. yuya.kiguchi@edu.k.u-tokyo.ac.jp.
Nature communications
|August 11, 2025
概括
科学家们在唾液中发现了"Inocles",一种新的巨型细菌元素,可以增强宿主细菌的抗压能力. 这些元素可以作为胃肠道癌症的生物标志物.
科学领域:
- 微生物学 微生物学
- 基因组学就是基因组学.
- 分子生物学分子生物学
背景情况:
- 外染色体元素 (ECE) 扩大了细菌的生存策略.
- 细菌适应性中ECEs的遗传多样性和功能作用尚未得到充分理解.
研究的目的:
- 发现和描述人类唾液中的新型细胞内ECE.
- 调查这些ECE的流行,遗传构成和功能作用.
- 探索它们作为癌症生物标志物的潜力.
主要方法:
- 开发一种高效的微生物DNA提取方法.
- 长读元基因组合用于ECE识别.
- 使用唾液元基因组数据集进行全球流行率分析.
- 与免疫标记物和癌症患者数据的相关性分析.
主要成果:
- 在Streptococcus中发现了一种名为"Inocles" (395 kb) 的巨型等离子体样ECEs的新型家族.
- 在研究的人口中,74%的人患有.
- 无菌体对抗压力耐受性和宿主细胞相互作用的基因进行编码.
- 在头和结直肠癌患者中观察到降低的Inocles水平,这表明生物标志物的潜力.
结论:
- 可以增强宿主细菌对抗环境压力因素的适应能力.
- 在细菌遗传学和适应性方面,无菌代表了一项重大发现.
- 无菌显示出作为胃肠道癌症的新生物标志物的潜力.
相关概念视频
Genome Size and the Evolution of New Genes
8.3K
While every living organism has a genome of some kind (be it RNA, or DNA), there is considerable variation in the sizes of these blueprints. One major factor that impacts genome size is whether the organism is prokaryotic or eukaryotic. In prokaryotes, the genome contains little to no non-coding sequence, such that genes are tightly clustered in groups or operons sequentially along the chromosome. Conversely, the genes in eukaryotes are punctuated by long stretches of non-coding sequence.
8.3K
Exon Recombination
3.7K
The evolution of new genes is critical for speciation. Exon recombination, also known as exon shuffling or domain shuffling, is an important means of new gene formation. It is observed across vertebrates, invertebrates, and in some plants such as potatoes and sunflowers. During exon recombination, exons from the same or different genes recombine and produce new exon-intron combinations, which might evolve into new genes.
Exon shuffling follows “splice frame rules.” Each exon...
Exon shuffling follows “splice frame rules.” Each exon...
3.7K
Non-LTR Retrotransposons
11.9K
As the name suggests, non-LTR retrotransposons lack the long terminal repeats characteristic of the LTR retrotransposons. Additionally, both LTR and non-LTR retrotransposons use distinct mechanisms of mobilization. Non-LTR retrotransposons are further divided into two classes - Long interspersed nuclear elements (LINEs) and short interspersed nuclear elements (SINEs), both of which occur abundantly in most mammals, including humans. Some of the active non-LTR retrotransposons in humans are L1...
11.9K
Bacterial Flora of the Large Intestine
643
The gut microbiome is formed by a vast and diverse community of bacteria that colonizes our large intestine. These bacteria start residing in the gut from birth and continue diversifying throughout life, influenced by factors such as diet, lifestyle, and stress. The gut bacterial community also includes bacteria from food and those that enter the colon through the anus.
The normal gut flora of the colon plays a critical role in generating essential vitamins such as vitamins K, B5, and B7.
The normal gut flora of the colon plays a critical role in generating essential vitamins such as vitamins K, B5, and B7.
643
Cell Inclusions
198
Prokaryotic cells possess a variety of inclusions that play crucial roles in nutrient storage, metabolic processes, and environmental adaptation. These structures enable bacteria to thrive under fluctuating environmental conditions by storing essential resources and optimizing their metabolic efficiency.Carbon Storage: Poly-β-Hydroxybutyric Acid and Glycogen GranulesBacteria frequently store excess carbon in specialized granules. Poly-β-hydroxybutyric acid (PHB) granules are lipid...
198
Genomic DNA in Prokaryotes
44.6K
The genome of most prokaryotic organisms consists of double-stranded DNA organized into one circular chromosome in a region of cytoplasm called the nucleoid. The chromosome is tightly wound, or supercoiled, for efficient storage. Prokaryotes also contain other circular pieces of DNA called plasmids. These plasmids are smaller than the chromosome and often carry genes that confer adaptive functions, such as antibiotic resistance.
Genomic Diversity in Bacteria
Although bacterial genomes are much...
Genomic Diversity in Bacteria
Although bacterial genomes are much...
44.6K


