综合测试STK11瘤抑制器中误解变异的功能
Daniel Zimmerman1,2,3,4, Atina Cote1,2,3, Warren van Loggerenberg1,2,3,4
1The Donnelly Centre, University of Toronto, Toronto, ON, Canada.
bioRxiv : the preprint server for biology
|August 12, 2025
概括
这项研究全面分析了STK11基因变异,创建了一个功能地图来分类误解变异. 本资源有助于理解Peutz-Jeghers综合征和癌症风险,改善临床变异解释.
科学领域:
- 遗传学 遗传学 是一个
- 分子生物学分子生物学
- 癌症研究 癌症研究
背景情况:
- STK11基因 (氨酸/氨酸激酶11) 是一种瘤抑制剂,与佩茨-杰格斯综合征 (PJS) 和各种癌症有关.
- 在临床上观察到的STK11误解变异中,显著多数 (超过94%) 缺乏最终分类,阻碍了临床可操作性.
- 准确的变体分类对于诊断PJS和评估与STK11突变相关的癌症风险至关重要.
研究的目的:
- 系统地评估STK11误解变体在规模上的功能影响.
- 为了生成STK11变体的全面功能地图,以帮助临床分类.
- 为解释未知意义的变异 (VUS) 和预测未来临床观察提供证据.
主要方法:
- 使用基于哺乳动物细胞的大规模测试,在全长STK11基因中得分6026个氨基酸替代.
- 根据现有的生化数据,较小规模的测试和致病性注释,生成并验证了功能性得分.
- 这项研究分析了STK11变体在患者队列中的影响,包括PJS和癌症患者.
主要成果:
- 功能评分与已知的STK11特性和致病性一致.
- 这项研究在晚年诊断的PJS患者中确定了生殖线STK11变异的独特模式.
- 为350个先前注释的STK11 VUS误解变体和大约80%未报告的误解变体提供了新的证据.
- 癌症患者体质STK11变体的生存估计与野生型STK11.11相比.
结论:
- 开发的STK11变体效应地图是理解序列结构功能关系的宝贵资源.
- 这个功能地图为解释临床STK11误解变体提供了可操作的证据.
- 这些发现提高了诊断PJS和评估癌症风险的能力,特别是对于未知意义的变异.
更多相关视频
10:57Visualizing Genetic Variants, Short Targets, and Point Mutations in the Morphological Tissue Context with an RNA In Situ Hybridization Assay
Published on: August 14, 2018
10.8K
09:34Targeted Next-generation Sequencing and Bioinformatics Pipeline to Evaluate Genetic Determinants of Constitutional Disease
Published on: April 4, 2018
34.0K
相关概念视频
Loss of Tumor Suppressor Gene Functions
5.1K
Tumor suppressor genes are normal genes that can slow down cell division, repair DNA mistakes, or program the cells for apoptosis in case of irreparable damage. Hence, they play an essential role in preventing the proliferation of damaged cells.
When the tumor suppressor genes develop mutations or are lost, cells start growing out of control, leading to cancer. However, a single functional copy of the tumor suppressor gene is enough for the cells to maintain their normal functions and cell...
When the tumor suppressor genes develop mutations or are lost, cells start growing out of control, leading to cancer. However, a single functional copy of the tumor suppressor gene is enough for the cells to maintain their normal functions and cell...
5.1K
Mismatch Repair
5.2K
Organisms are capable of detecting and fixing nucleotide mismatches that occur during DNA replication. This sophisticated process requires identifying the new strand and replacing the erroneous bases with correct nucleotides. Mismatch repair is coordinated by many proteins in both prokaryotes and eukaryotes.
The Mutator Protein Family Plays a Key Role in DNA Mismatch Repair
The human genome has more than 3 billion base pairs of DNA per cell. Prior to cell division, that vast amount of genetic...
The Mutator Protein Family Plays a Key Role in DNA Mismatch Repair
The human genome has more than 3 billion base pairs of DNA per cell. Prior to cell division, that vast amount of genetic...
5.2K
Cancer-Critical Genes II: Tumor Suppressor Genes
8.0K
Genes usually encode proteins necessary for the proper functioning of a healthy cell. Mutations can often cause changes to the gene expression pattern, thereby altering the phenotype.
When the function of certain critical genes, especially those involved in cell cycle regulation and cell growth signaling cascades, gets disrupted, it upsets the cell cycle progression. Such cells with unchecked cell cycles start proliferating uncontrollably and eventually develop into tumors.
Such genes that act...
When the function of certain critical genes, especially those involved in cell cycle regulation and cell growth signaling cascades, gets disrupted, it upsets the cell cycle progression. Such cells with unchecked cell cycles start proliferating uncontrollably and eventually develop into tumors.
Such genes that act...
8.0K
Spontaneous and Induced Mutations
145
Spontaneous mutations arise infrequently during DNA replication due to errors in the process. A key factor behind these errors is tautomeric shifts in nitrogenous bases, where bases transition from keto to enol forms or amino to imino forms. This shift can alter base-pairing rules, leading to mutations. Additionally, reactive oxygen species (ROS) arising from aerobic metabolism can damage DNA, resulting in depurination (loss of a purine base) or depyrimidination (loss of a pyrimidine base).
145
In-vitro Mutagenesis
14.2K
To learn more about the function of a gene, researchers can observe what happens when the gene is inactivated or “knocked out,” by creating genetically engineered knockout animals. Knockout mice have been particularly useful as models for human diseases such as cancer, Parkinson’s disease, and diabetes.
14.2K
Point and Frameshift Mutations
86
Point mutations are genetic alterations involving the change of a single nucleotide base pair in DNA. Depending on how the alteration affects protein synthesis, they can lead to various consequences.Point mutations fall into the following types:Silent mutations occur when a nucleotide change does not alter the amino acid sequence due to the redundancy of the genetic code. For instance, changing ACC to ACA still encodes threonine, leaving the protein function unaffected. This occurs because...
86
