了解通过同义重编码引入流感A病毒的非目标生长缺陷
Colin P Sharp1, Beth H Thompson2, Ananya Ferdous Hoque3
1The University of Edinburgh; colin.sharp@ed.ac.uk.
概括
设计的高CpG流感A病毒 (IAV) 复制缺陷不是由于CpG含量,而是8-腺素通道. 这个通道导致了聚合酶滑动,异常和干扰素诱导,揭示了对病毒衰减的洞察力.
科学领域:
- 病毒学 病毒学
- 分子生物学分子生物学
- 免疫学 免疫学 免疫学
背景情况:
- 在RNA病毒基因组中,CpG二核酸通常代表性不足.
- 增加的CpG含量可能导致复制缺陷,这是由于指抗病毒蛋白 (ZAP) 的识别.
- 之前的研究设计了具有复制缺陷的CpG丰富的流感A病毒 (IAV).
研究的目的:
- 为了调查以前设计的CpG高的IAV突变体中复制缺陷的原因.
- 了解补偿突变在病毒衰减中的作用.
- 探索8-腺素 (8A) 通道对病毒复制和宿主反应的影响.
主要方法:
- 对IAV进行基因操纵,以产生高CpG和8A通道变异.
- 在体外对病毒复制和衰减的分析.
- 评估聚合酶滑动,异常生成和I型干扰素诱导.
- 野生型,高CpG和8A通道病毒的比较.
主要成果:
- 高CpG的IAV突变的衰减并不是由ZAP对CpG的识别引起的.
- 创建8A通道的补偿突变是观察到的复制缺陷的原因.
- 8A通道诱导病毒聚合酶滑动,异常合成和I型干扰素.
- 在8A通道部位恢复野生类型序列取消了衰减,而将8A通道引入野生类型病毒导致了衰减.
结论:
- 一个8A通道,而不是增加的CpG含量,是这种工程IAV减弱的主要驱动因素.
- 单个核酸的变化可以显著影响病毒衰减和抵消工程障碍.
- 聚氨基酶在聚氨酸通道上的滑动可能为病毒进化和病原菌株的出现提供了洞察力.
相关概念视频
Leaky Scanning
5.2K
During most eukaryotic translation processes, the small 40S ribosome subunit scans an mRNA from its 5' end until it encounters the first start AUG codon. The large 60S ribosomal subunit then joins the smaller one to initiate protein synthesis. The location of the translation initiation is largely determined by the nucleotides near the start codon as there may be multiple translation initiation sites present on the mRNA. Marilyn Kozak discovered that the sequence RCCAUGG (where R...
5.2K
Viral Mutations
32.9K
A mutation is a change in the sequence of bases of DNA or RNA in a genome. Some mutations occur during replication of the genome due to errors made by the polymerase enzymes that replicate DNA or RNA. Unlike DNA polymerase, RNA polymerase is prone to errors because it is not capable of “proofreading” its work. Viruses with RNA-based genomes, like HIV, therefore accrue mutations faster than viruses with DNA-based genomes. Because mutation and recombination provide the raw material...
32.9K
Viral Recombination
23.8K
Cells are sometimes infected by more than one virus at once. When two viruses disassemble to expose their genomes for replication in the same cell, similar regions of their genomes can pair together and exchange sequences in a process called recombination. Alternatively, viruses with segmented genomes can swap segments in a process called reassortment.
23.8K
Genome Copying Errors
4.4K
DNA replication is a well-evolved process that copies millions of base pairs with high fidelity during each cell division. Occasionally a wrong base or a long stretch of wrong bases may get added to the daughter strands. If the errors are left unchecked, cells might accumulate several mutations that might endanger their survival. Therefore, the copying errors are checked and repaired at three levels.
4.4K
Exon Recombination
3.7K
The evolution of new genes is critical for speciation. Exon recombination, also known as exon shuffling or domain shuffling, is an important means of new gene formation. It is observed across vertebrates, invertebrates, and in some plants such as potatoes and sunflowers. During exon recombination, exons from the same or different genes recombine and produce new exon-intron combinations, which might evolve into new genes.
Exon shuffling follows “splice frame rules.” Each exon...
Exon shuffling follows “splice frame rules.” Each exon...
3.7K
Nonsense-mediated mRNA Decay
10.8K
The Upf proteins that carry out nonsense-mediated decay (NMD) are found in all eukaryotic organisms, including humans. Each protein has an individual role, but they need to work in collaboration. Upf1 is an ATP-dependent RNA helicase that unwinds the RNA helix. Because Upf1 can unwind any RNA, Upf2 and Upf3 are required to help Upf1 discriminate between nonsense and normal mRNAs.
Usually, Upf3 binds to an Exon Junction Complex (EJC) at mRNA splice sites. If a ribosome fully translates the mRNA,...
Usually, Upf3 binds to an Exon Junction Complex (EJC) at mRNA splice sites. If a ribosome fully translates the mRNA,...
10.8K


