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相关概念视频

RNA-seq03:21

RNA-seq

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RNA sequencing, or RNA-Seq, is a high-throughput sequencing technology used to study the transcriptome of a cell. Transcriptomics helps to interpret the functional elements of a genome and identify the molecular constituents of an organism. Additionally, it also helps in understanding the development of an organism and the occurrence of diseases. 
Before the discovery of RNA-seq, microarray-based methods and Sanger sequencing were used for transcriptome analysis. However, while...
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Ribosome Profiling02:24

Ribosome Profiling

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Ribosome profiling or ribo-sequencing is a deep sequencing technique that produces a snapshot of active translation in a cell. It selectively sequences the mRNAs protected by ribosomes to get an insight into a cell’s translation landscape at any given point in time.
Applications of ribosome profiling
Ribosome profiling has many applications, including in vivo monitoring of translation inside a particular organ or tissue type and quantifying new protein synthesis levels.
The technique...
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In-situ Hybridization02:31

In-situ Hybridization

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In situ hybridization (ISH) is a technique used to detect and localize specific DNA or RNA molecules in cells, tissue, or tissue sections using a labeled probe. The technique was first used in 1969 for the investigation of nucleic acids. It is currently an essential tool in scientific research and clinical settings, especially for diagnostic purposes.
Types of probes and labels
A probe is a complementary strand of DNA or RNA that binds to corresponding nucleotide sequences in a cell. Many...
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Labeling DNA Probes03:31

Labeling DNA Probes

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DNA probes are fragments of DNA labeled with a reporter tag to enable their detection or purification. The resulting labeled DNA probes can then hybridize to target nucleic acid sequences through complementary base-pairing, and may be used to recover or identify these regions.
Radioisotopes, fluorophores, or small molecule binding partners like biotin or digoxigenin, are the most widely used reporter tags for labeling DNA probes. These labels can be attached to the probe DNA molecule via...
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相关实验视频

Updated: Sep 11, 2025

Author Spotlight: RNA FISH for Locating lncRNA-SNHG6 in Osteosarcoma Cells
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Author Spotlight: RNA FISH for Locating lncRNA-SNHG6 in Osteosarcoma Cells

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分析RNA定位使用RNA近距离标记方法OINC-seqq.

Megan C Pockalny1, Hei-Yong G Lo1,2, Raeann Goering1,2

  • 1Department of Biochemistry and Molecular Genetics, University of Colorado Anschutz Medical Campus, Aurora, CO, USA.

Bio-protocol
|August 13, 2025
PubMed
概括
此摘要是机器生成的。

我们开发了OINC-seq,这是一种绘制细胞内RNA定位的新方法. 该技术使用靠近依赖的RNA氧化和测序来识别特定亚细胞位置的RNA含量.

关键词:
靠近标签的标签.RNA局部化的RNA局部化基因组RNA的修改 基因组RNA的改变在RNA氧化过程中,RNA氧化贩运RNA的人口.

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A Rapid High-throughput Method for Mapping Ribonucleoproteins RNPs on Human pre-mRNA
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A Rapid High-throughput Method for Mapping Ribonucleoproteins RNPs on Human pre-mRNA

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RNA Isolation from Cell Specific Subpopulations Using Laser-capture Microdissection Combined with Rapid Immunolabeling
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相关实验视频

Last Updated: Sep 11, 2025

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A Rapid High-throughput Method for Mapping Ribonucleoproteins RNPs on Human pre-mRNA
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科学领域:

  • 分子生物学分子生物学
  • 细胞生物学 细胞生物学
  • 基因组学就是基因组学.

背景情况:

  • RNA局部化对细胞功能至关重要,但指导这种运输的序列和亚细胞位置的RNA含量在很大程度上是未知的.
  • 现有的方法缺乏全面绘制亚细胞转录组的分辨率.

研究的目的:

  • 开发和验证一种新的方法,OINC-seq,用于测试RNA局部化和表征亚细胞转录组.
  • 为了使RNA传输机制和局部RNAs的功能作用的研究.

主要方法:

  • OINC-seq采用可光激活的,空间受限的RNA氧化来标记靠近诱蛋白的RNA.
  • 氧化RNA标记通过观察反转录酶错误整合事件,通过高通量测序来检测.
  • 软件包PIGPEN量化了突变率,以推断RNA与诱蛋白的接近性.

主要成果:

  • OINC-seq成功地测试了各种亚细胞位置的RNA含量.
  • 该方法提供了RNA接近局部蛋白质的定量测量.
  • 氧化RNA标记的高通量测序读取不需要事先进行丰富.

结论:

  • OINC-seq是研究亚细胞转录组和RNA局部化的强大工具.
  • 这种方法提升了我们对RNA运输和细胞内功能的理解.
  • OINC-seq和PIGPEN的组合为RNA映射提供了一个全面的方法.