在菌体基因组中存在II组内子
Liana N Merk1,2,3, Thomas A Jones1,2, Sean R Eddy1,2
1Department of Molecular and Cellular Biology, Harvard University, Cambridge, MA 02138, United States.
Nucleic acids research
|August 14, 2025
概括
移动遗传元素称为II组内子,以前认为菌体中不存在,现在被发现广泛存在. 这些元素在不同的菌体类型中发现,挑战了以前的假设.
科学领域:
- 基因组学就是基因组学.
- 分子生物学分子生物学
- 病毒学 病毒学
背景情况:
- 由于强大的选择性压力,菌体基因组密集地装有基因.
- 已知移动遗传元素 (MGE) 侵入菌体基因组.
- 第二组内基,一种MGE,通常在细菌,古生物和器官基因组中发现,但被认为在菌体中不存在.
研究的目的:
- 调查细菌基因组中II组内子的存在和流行情况.
- 为了克服因缺乏初级序列相似性而存在的II组内子识别方面的挑战.
主要方法:
- 利用了基于RNA结构的同质性搜索的进展.
- 采用协差模型来识别II组内基特征的保存的二次结构.
主要成果:
- 发现II组内子在细菌体中广泛分布.
- 鉴定了来自不同类遗传背景的菌体中的II组内子,包括内共生菌体和大菌体.
结论:
- 菌体中并不缺少II组内子,但在各种菌体类型中是共同的特征.
- 这些发现扩大了II组内基因的已知宿主范围,并突出了它们在菌体基因组中的MGE作用.
相关概念视频
DNA Bacteriophages
145
Bacteriophages, or phages, are viruses that specifically infect bacteria, utilizing their genetic material to hijack host cellular machinery for replication. DNA bacteriophages employ single-stranded DNA (ssDNA) or double-stranded DNA (dsDNA) genomes. These phages exhibit diverse replication strategies and host interactions, influencing their ecological roles and applications in biotechnology and medicine.ssDNA BacteriophagesssDNA phages, with their small genomes, utilize unique strategies to...
145
Lysogenic Cycle of Bacteriophages
63.2K
In contrast to the lytic cycle, phages infecting bacteria via the lysogenic cycle do not immediately kill their host cell. Instead, they combine their genome with the host genome, allowing the bacteria to replicate the phage DNA along with the bacterial genome. The incorporated copy of the phage genome is called the prophage. Some prophages can re-activate and enter the lytic cycle. This often occurs in response to a perturbation, such as DNA damage, but can also transpire in the absence of...
63.2K
Lytic Cycle of Bacteriophages
72.0K
Bacteriophages, also known as phages, are specialized viruses that infect bacteria. A key characteristic of phages is their distinctive “head-tail” morphology. A phage begins the infection process (i.e., lytic cycle) by attaching to the outside of a bacterial cell. Attachment is accomplished via proteins in the phage tail that bind to specific receptor proteins on the outer surface of the bacterium. The tail injects the phage’s DNA genome into the bacterial cytoplasm. In the...
72.0K
Viral Replication: Lysogenic Cycle
238
The lysogenic cycle is a crucial viral replication strategy that allows bacteriophages to persist within host cells without immediately destroying them. This process is primarily observed in temperate phages, such as bacteriophage lambda (λ), which infects Escherichia coli. The cycle allows the viral genome to persist across bacterial generations while keeping host cells viable.Integration of the Viral GenomeUpon infection, bacteriophage lambda attaches to the bacterial surface and injects...
238
Viruses with RNA Genomes
119
RNA viruses are categorized into positive-strand, negative-strand, or double-stranded groups based on their genomic structure and replication mechanisms. This classification dictates how they exploit host cellular machinery for protein synthesis and replication. Some RNA viruses also utilize reverse transcription as part of their life cycle, further diversifying their replication strategies.Positive-Strand RNA VirusesPositive-strand RNA viruses have genomes that function directly as messenger...
119
Retroviruses
12.7K
Retroviruses and retrotransposons both insert copies of their genetic elements into the genome of the host cell. Thus, the viral genes are passed on when the host genome is replicated or translated. A typical retroviral DNA sequence contains 3-4 genes that encode the different proteins required for its structural assembly and function as a molecular parasite. This DNA is transcribed into a single mRNA, which is very similar in structure to conventional mRNAs, i.e., it is capped at the 5’...
12.7K


