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相关概念视频

Signal Transduction: Overview01:26

Signal Transduction: Overview

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Cells respond to many types of information, often through receptor proteins positioned on the membrane. They respond to chemical signals, such as hormones, neurotransmitters, and other signaling molecules, initiating a series of molecular reactions to produce an appropriate response. This is called signal transduction. Cells also coordinate different responses elicited by the same signaling molecule via mediators, allowing molecular cross-talk.
Typically, signal transduction involves three...
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Ligand Binding Sites02:40

Ligand Binding Sites

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Proteins are dynamic macromolecules that carry out a wide variety of essential processes; however, the activities of most proteins depend on their interactions with other molecules or ions, known as ligands.
Protein-ligand interactions are quite specific; even though numerous potential ligands surround a cellular protein at any given time, only a particular ligand can bind to that protein. Moreover, a ligand binds only to a dedicated area on the surface of the protein, known as the...
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Ligand Binding and Linkage00:49

Ligand Binding and Linkage

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Allosteric proteins have more than one ligand binding site; the binding of a ligand to any of these sites influences the binding of ligands to the other sites. When a protein is allosteric, its binding sites are called coupled or linked.  In the case of enzymes, the site that binds to the substrate is known as the active site and the other site is known as the regulatory site. When a ligand binds to the regulatory site, this leads to conformational changes in the protein that can influence...
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Interactions Between Signaling Pathways01:19

Interactions Between Signaling Pathways

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Signaling cascades usually lack linearity. Multiple pathways interact and regulate one another, allowing cells to integrate and respond to diverse environmental stimuli.
Convergence and divergence, and cross-talk between signaling pathways
Two distinct signaling pathways can converge on a single functional unit, which may either be a single protein or a complex of proteins. The response is either functionally distinct or synergistic between the two pathways but different from the response...
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Overview of Cell Signaling01:23

Overview of Cell Signaling

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Despite the protective membrane that separates a cell from the environment, cells need the ability to detect and respond to environmental changes. Additionally, cells often need to communicate with one another. Unicellular and multicellular organisms use a variety of cell signaling mechanisms to communicate with the environment.
Cells respond to many types of information, often through receptor proteins positioned on the membrane. For example, skin cells respond to and transmit touch...
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Internal Receptors01:31

Internal Receptors

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Many cellular signals are hydrophilic and therefore cannot pass through the plasma membrane. However, small or hydrophobic signaling molecules can cross the hydrophobic core of the plasma membrane and bind to internal, or intracellular, receptors that reside within the cell. Many mammalian steroid hormones use this mechanism of cell signaling, as does nitric oxide (NO) gas.
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相关实验视频

Updated: Sep 10, 2025

Using Confocal Analysis of Xenopus laevis to Investigate Modulators of Wnt and Shh Morphogen Gradients
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在下游基因的功能支持下发现空间可变的配体-受体相互作用

Shiying Li1, Ruohan Wang1, Sitong Liu1

  • 1Department of Computer Science, City University of Hong Kong, Hong Kong, China.

Nature communications
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概括

使用空间转录组学,SPIDER识别了空间可变的联体受体相互作用 (LRIs). 这种方法准确地揭示了细胞间的沟通模式以及它们在复杂组织中的生物学意义.

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Detection of Signaling Effector-Complexes Downstream of BMP4 Using in situ PLA, a Proximity Ligation Assay
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科学领域:

  • 基因组学
  • 计算生物学
  • 系统生物学

背景情况:

  • 空间转录学使得研究细胞间体-受体相互作用 (LRIs) 与空间背景成为可能.
  • 识别空间变量的LRI对于理解组织和功能至关重要.

研究的目的:

  • 介绍SPIDER,一个用于识别具有激活证据的空间变量LRI的新计算框架.
  • 开发一种分析和识别空间变量交互 (SVI) 信号的方法.

主要方法:

  • 基于细胞交互能力构建细胞交互接口.
  • 它使用多种概率模型来识别由下游转录因子支持的SVI信号.
  • 该方法使用模拟和真实数据集在批量和单细胞分辨率上进行验证.

主要成果:

  • 与现有的方法相比,SPIDER的准确性,特异性和空间差异性都更高.
  • 经过验证的SVI显示了生物复制品的空间自相关性和下游目标基因的相关性.
  • 鼠标数据集中的不同SVI突出显示区域和细胞间类型的相互作用.

结论:

  • SPIDER有效地识别和描述空间变化的配体-受体相互作用.
  • 该框架将SVI分为模式,揭示基于相互作用的子集群和细胞类型区域内的丰富途径.