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相关概念视频

Introduction to Enzyme Kinetics01:19

Introduction to Enzyme Kinetics

20.8K
Enzyme kinetics studies the rates of biochemical reactions. Scientists monitor the reaction rates for a particular enzymatic reaction at various substrate concentrations. Additional trials with inhibitors or other molecules that affect the reaction rate may also be performed.
The experimenter can then plot the initial reaction rate or velocity (Vo) of a given trial against the substrate concentration ([S]) to obtain a graph of the reaction properties. For many enzymatic reactions involving a...
20.8K
Enzyme Kinetics01:19

Enzyme Kinetics

98.7K
Enzymes speed up reactions by lowering the activation energy of the reactants. The speed at which the enzyme turns reactants into products is called the rate of reaction. Several factors impact the rate of reaction, including the number of available reactants. Enzyme kinetics is the study of how an enzyme changes the rate of a reaction.
Scientists typically study enzyme kinetics with a fixed amount of enzyme in the controlled environment of a test tube. When more reactant, or substrate, is...
98.7K
Introduction to Mechanisms of Enzyme Catalysis01:13

Introduction to Mechanisms of Enzyme Catalysis

8.8K
For many years, scientists thought that enzyme-substrate binding took place in a simple "lock-and-key" fashion. This model stated that the enzyme and substrate fit together perfectly in one instantaneous step. However, current research supports a more refined view scientists call induced fit. The induced-fit model expands upon the lock-and-key model by describing a more dynamic interaction between enzyme and substrate. As the enzyme and substrate come together, their interaction causes...
8.8K
Enzymes02:34

Enzymes

82.6K
Inside living organisms, enzymes act as catalysts for many biochemical reactions involved in cellular metabolism. The role of enzymes is to reduce the activation energies of biochemical reactions by forming complexes with its substrates. The lowering of activation energies favor an increase in the rates of biochemical reactions.
Enzyme deficiencies can often translate into life-threatening diseases. For example, a genetic abnormality resulting in the deficiency of the enzyme G6PD...
82.6K
Induced-fit Model01:13

Induced-fit Model

82.1K
Most chemical reactions in cells require enzymes—biological catalysts that speed up the reaction without being consumed or permanently changed. They reduce the activation energy needed to convert the reactants into products. Enzymes are proteins, that usually work by binding to a substrate—a reactant molecule that they act upon.
Enzymes exhibit substrate specificity, meaning that they can only bind to certain substrates. This is mainly determined by the shape and chemical...
82.1K
Ligand Binding and Linkage00:49

Ligand Binding and Linkage

4.9K
Allosteric proteins have more than one ligand binding site; the binding of a ligand to any of these sites influences the binding of ligands to the other sites. When a protein is allosteric, its binding sites are called coupled or linked.  In the case of enzymes, the site that binds to the substrate is known as the active site and the other site is known as the regulatory site. When a ligand binds to the regulatory site, this leads to conformational changes in the protein that can influence...
4.9K

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相关实验视频

Updated: Sep 10, 2025

Identification of Kinase-substrate Pairs Using High Throughput Screening
11:13

Identification of Kinase-substrate Pairs Using High Throughput Screening

Published on: August 29, 2015

8.3K

酶基质相互作用的结构导向动力学数据集

Sowmya Ramaswamy Krishnan1, Nishtha Pandey1, Rajgopal Srinivasan1

  • 1TCS Research (Life Sciences division), Tata Consultancy Services, Hyderabad, 500081, India.

Scientific data
|August 26, 2025
PubMed
概括

这项研究介绍了SKiD,该数据集将酶运动参数 (kcat和Km) 与3D结构联系起来. 该资源增强了对酶功能的理解,并有助于酶设计和合成生物学应用.

科学领域:

  • 生物化学
  • 结构生物学
  • 生物信息学

背景情况:

  • 酶是控制生化反应的关键生物催化剂.
  • 由kcat和Km定义的酶动力学量化了效率和特异性.
  • 在将动力参数与酶基质复杂的3D结构联系起来时存在差距.

研究的目的:

  • 创建SKiD,一个集成酶动力参数 (kcat,Km) 与3D结构数据的数据集.
  • 填补酶动力学与结构生物学之间的差距.
  • 支持酶设计,合成生物学和代谢工程方面的进步.

主要方法:

  • 来自现有的生物信息资源的综合数据.
  • 使用自动化程序进行数据处理和计算预测.
  • 手动解决错误的数据和保存的元数据,如测试条件.
  • 提供了UniProtKB标识符的酶基质复合物的3D坐标.

主要成果:

  • 开发了SKiD,一个全面的数据集,将动力参数与3D结构联系起来.
  • 成功整合和策划了酶的动力和结构数据.
  • 包括酶基质复合物的元数据和3D坐标.

更多相关视频

Unraveling Entropic Rate Acceleration Induced by Solvent Dynamics in Membrane Enzymes
09:42

Unraveling Entropic Rate Acceleration Induced by Solvent Dynamics in Membrane Enzymes

Published on: January 16, 2016

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Modeling an Enzyme Active Site using Molecular Visualization Freeware
14:37

Modeling an Enzyme Active Site using Molecular Visualization Freeware

Published on: December 25, 2021

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相关实验视频

Last Updated: Sep 10, 2025

Identification of Kinase-substrate Pairs Using High Throughput Screening
11:13

Identification of Kinase-substrate Pairs Using High Throughput Screening

Published on: August 29, 2015

8.3K
Unraveling Entropic Rate Acceleration Induced by Solvent Dynamics in Membrane Enzymes
09:42

Unraveling Entropic Rate Acceleration Induced by Solvent Dynamics in Membrane Enzymes

Published on: January 16, 2016

9.1K
Modeling an Enzyme Active Site using Molecular Visualization Freeware
14:37

Modeling an Enzyme Active Site using Molecular Visualization Freeware

Published on: December 25, 2021

10.1K

结论:

  • SKiD为了解酶功能的结构基础提供了宝贵的资源.
  • 该数据集促进了酶设计,合成生物学和代谢工程方面的研究.
  • 将动力学映射到结构中可以更深入地了解酶机制.