通过高覆盖率废水测序来表征流感A病毒系和临床相关突变
Anika John1, Seju Kang2, Lara Fuhrmann1
1Department of Biosystems Science and Engineering, ETH Zurich, CH-4056 Basel, Switzerland; SIB Swiss Institute of Bioinformatics, CH-1015 Lausanne, Switzerland.
Water research
|August 27, 2025
概括
污水监测有效地跟踪流感A病毒的演变,识别疫苗和抗病毒策略的关键突变. 该方法提供可靠的基因组数据,补充公共卫生临床监测.
科学领域:
- 病毒学
- 公共卫生
- 基因组监测
背景情况:
- A型流感病毒造成重大公共卫生问题,需要持续的基因组监测.
- 病毒快速演变需要有效的疫苗和抗病毒开发策略.
- 基于废水的监测提供了一种具有成本效益和公正的基因组监测方法.
研究的目的:
- 开发和验证一种用于废水中的A型流感病毒基因组监测的新型基因组.
- 评估基于废水的监测对追踪流感A病毒多样性和突变的有用性.
- 将废水基因组数据与临床监测数据相关联.
主要方法:
- 开发针对H1N1和H3N2亚型流感A病毒的HA,NA和M细分体的片板.
- 在两个冬季 (2022/2023,2023/2024) 中,从59个瑞士废水样本中测序核酸提取物.
- 对废水基因组数据进行分类丰度,血统识别和突变跟踪的分析.
主要成果:
- 基于废水的统治性H1N1种群的丰度估计与2023/2024赛季的临床估计相关.
- 废水测序确定了疫苗和药物点的突变,与临床发现保持一致.
- 通过废水监测取得了成功的血统识别和突变跟踪.
结论:
- 基于废水的基因组监测是监测A型流感病毒的有效工具.
- 这种方法有助于识别流通的菌株和跟踪与公共健康相关的遗传变化.
- 这些发现支持使用废水监测为流感疫苗和抗病毒策略提供信息.
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